Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Reverse (-)

17323447 .. 17323986

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG193500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGAAATTTCAGGCTTTTGCCTCTTCATCTTAGTCTTCCTTGTCTTCGGAGGCAGTGTGTCTGTCGTGCGGTGTTTGGGTACTGCTGGGGCCATGTCGGTGGTCCAATTTGCTGTTGGTACACTATCAGAGGGATGCGGTGATTACTGGGAGGAGTGGGATCCGGGAAGCAGTACCGGTGATCTCAGGGTTTTGGGGCGAGGTCTCGCTGCAGATACGGTGGTGATGGGTGCTTGGTCGGATCGATGGTTGAAGGATAAGGGTGGTGGGAACCCGGTTTCTTTTTCTGCCGGTGGGTTTGGATCTTCATCTGCGTGGGATTACGACGCTACCGGGACGAGGCTGAAGAACGTTGGATTCTGGTGTGAGGCAAGGGGATTGGGTTTTGGTGGTGATGGCCGAGCGGTGGTGTCATCTTGTTGGGACTTCGATGGCGGCGTTTTCTTCATCGGCGGTGGCTATAACAGTTTGGCAATCTTCTCCATTACAGGTCATAGGGGCGTCCAACGGTGTTGCTGTCCAGATCGCTGGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

18.93

Weight (kDa)

4.89

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	407
AciI	CCGC	5 cut(s)	73, 141, 407, 438, 456
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	4 cut(s)	158, 171, 252, 313
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	504
AfaI	GTAC	3 cut(s)	85, 124, 178
AfiI	CCNNNNNNNGG	2 cut(s)	342, 409
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	4 cut(s)	158, 171, 252, 313
AoxI	GGCC	2 cut(s)	93, 400
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	93, 106
AsuC2I	CCSGG	3 cut(s)	168, 278, 337
AsuHPI	GGTGA	4 cut(s)	155, 194, 238, 407
AvaII	GGWCC	1 cut(s)	106
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	2 cut(s)	31, 40
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	4 cut(s)	223, 243, 392, 428
BcnI	CCSGG	3 cut(s)	168, 278, 337
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	538
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	213, 439
BlsI	GCNGC	2 cut(s)	214, 440
Bme1390I	CCNGG	3 cut(s)	168, 278, 337
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	93, 106
BmiI	GGNNCC	3 cut(s)	94, 165, 275
BmrFI	CCNGG	3 cut(s)	168, 278, 337
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	2 cut(s)	31, 40
BpuMI	CCSGG	3 cut(s)	168, 278, 337
Bsa29I	ATCGAT	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 409
Bse118I	RCCGGY	2 cut(s)	179, 293
Bse1I	ACTGG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	247
BseGI	GGATG	1 cut(s)	143
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	342, 409
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	2 cut(s)	95, 402
BshTI	ACCGGT	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	247
BsiSI	CCGG	5 cut(s)	167, 180, 278, 294, 336
BslFI	GGGAC	2 cut(s)	352, 440
BslI	CCNNNNNNNGG	2 cut(s)	342, 409
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	2 cut(s)	352, 440
BsnI	GGCC	2 cut(s)	95, 402
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	163, 184, 244, 305, 526
BspACI	CCGC	5 cut(s)	73, 141, 407, 438, 456
BspANI	GGCC	2 cut(s)	95, 402
BspCNI	CTCAG	1 cut(s)	201
BspDI	ATCGAT	1 cut(s)	247
BspLI	GGNNCC	3 cut(s)	94, 165, 275
BspMAI	CTGCAG	1 cut(s)	217
BspPI	GGATC	4 cut(s)	158, 171, 252, 313
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	407
BsrFI	RCCGGY	2 cut(s)	179, 293
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	2 cut(s)	179, 293
BssMI	GATC	5 cut(s)	163, 184, 244, 305, 526
BssNI	GRCGYC	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	223, 470, 513
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	504
BstC8I	GCNNGC	1 cut(s)	533
BstDEI	CTNAG	2 cut(s)	34, 188
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	5 cut(s)	166, 187, 247, 308, 529
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	5 cut(s)	163, 184, 244, 305, 526
BstSCI	CCNGG	3 cut(s)	166, 276, 335
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	2 cut(s)	31, 40
BstX2I	RGATCY	2 cut(s)	163, 305
BstXI	CCANNNNNNTGG	2 cut(s)	103, 531
BstYI	RGATCY	2 cut(s)	163, 305
Bsu15I	ATCGAT	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	95, 402
BsuTUI	ATCGAT	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	143
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	533
Cfr10I	RCCGGY	2 cut(s)	179, 293
Cfr13I	GGNCC	2 cut(s)	93, 106
ClaI	ATCGAT	1 cut(s)	247
CseI	GACGC	2 cut(s)	338, 493
Csp6I	GTAC	3 cut(s)	84, 123, 177
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	5 cut(s)	18, 95, 346, 402, 462
CviKI_1	RGCY	5 cut(s)	18, 95, 346, 402, 462
CviQI	GTAC	3 cut(s)	84, 123, 177
DdeI	CTNAG	2 cut(s)	34, 188
DpnI	GATC	5 cut(s)	165, 186, 246, 307, 528
DpnII	GATC	5 cut(s)	163, 184, 244, 305, 526
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	368
FaeI	CATG	1 cut(s)	100
FaiI	YATR	3 cut(s)	98, 465, 498
FaqI	GGGAC	2 cut(s)	352, 440
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	213, 439
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	213, 439
FspBI	CTAG	1 cut(s)	538
GluI	GCNGC	2 cut(s)	213, 439
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	95, 402
HapII	CCGG	5 cut(s)	167, 180, 278, 294, 336
HgaI	GACGC	2 cut(s)	338, 493
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	1 cut(s)	360
HpaII	CCGG	5 cut(s)	167, 180, 278, 294, 336
HphI	GGTGA	4 cut(s)	155, 194, 238, 407
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	53, 133, 244
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	223, 470, 513
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	34, 188
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	163, 184, 244, 305, 526
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	538
MaeII	ACGT	1 cut(s)	354
MalI	GATC	5 cut(s)	165, 186, 246, 307, 528
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	5 cut(s)	163, 184, 244, 305, 526
MboII	GAAGA	7 cut(s)	19, 31, 40, 300, 361, 439, 472
MflI	RGATCY	2 cut(s)	163, 305
MluCI	AATT	2 cut(s)	9, 110
MmeI	TCCRAC	3 cut(s)	222, 337, 532
MnlI	CCTC	7 cut(s)	35, 47, 127, 148, 197, 336, 364
MslI	CAYNNNNRTG	2 cut(s)	101, 316
MspI	CCGG	5 cut(s)	167, 180, 278, 294, 336
MspR9I	CCNGG	3 cut(s)	168, 278, 337
NciI	CCSGG	3 cut(s)	168, 278, 337
NdeII	GATC	5 cut(s)	163, 184, 244, 305, 526
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	3 cut(s)	94, 165, 275
NmeAIII	GCCGAG	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	360
PfoI	TCCNGGA	1 cut(s)	166
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	214, 440
Psp1406I	AACGTT	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	94, 165, 275
PspPI	GGNCC	2 cut(s)	93, 106
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	163, 305
RsaI	GTAC	3 cut(s)	85, 124, 178
RsaNI	GTAC	3 cut(s)	84, 123, 177
RseI	CAYNNNNRTG	2 cut(s)	101, 316
SatI	GCNGC	2 cut(s)	213, 439
Sau3AI	GATC	5 cut(s)	163, 184, 244, 305, 526
Sau96I	GGNCC	2 cut(s)	93, 106
ScrFI	CCNGG	3 cut(s)	168, 278, 337
SetI	ASST	3 cut(s)	208, 357, 496
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	2 cut(s)	101, 316
Sse9I	AATT	2 cut(s)	9, 110
SsiI	CCGC	5 cut(s)	73, 141, 407, 438, 456
SspMI	CTAG	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	166, 276, 335
TaaI	ACNGT	3 cut(s)	223, 470, 513
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	247, 432
TasI	AATT	2 cut(s)	9, 110
TauI	GCSGC	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	360
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	19, 300, 439
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.