Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

24409073 .. 24412994

Gene Structure 3922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTCCTGGTGGAACCTAAGTTATACTCAAATCTGGGTACTGCTTTTAGGAGGTCTTGTCTCAGCTGGTATATTGGATGTGTGGGACATGATTTCCCAATACCCAAACATTAGATACTTATTAGTAGATACACACGAGCATTGCAGAACCTTCAAAGGTACCAGAAAAAGGGCAGCTTTTGTCTTTATTATTGCATTTTGGTTGCTGGATCTTGGCAATAATACAGTGCAGGTAACGAGTGCATCAAAGAGAGGCAGTGCATGTTTGGAGAGGAGTTTGGGCGCTGCTGGGGCGGTGTCGTCGGGCCAAAATTCTGTTGGTACGAGTTCGGAGGTAAGCGGTGATTACTGGGAGAAGTGGGATCCGGGTAGAAGCCTTGTTGATCTCAGTGGGTCTCTTCTTCCCGACAGTGCTGCTAAAGCGGTGGGGAATTGGTGGGTGCGAAACGGGGCTGTCCTCTGGCTAGATTGCACGATGGTGTGGGTGTCGTACCCCACTGGTGGATCTATCCTAGGTGATGTTGGAGTTCGGTTTTGGGTCCTCGACATTCTTCGATGCCAGGGTGGTGTGGCAGTTGACGGGCCATCGTTTAGCGGCTTGACGGATATGGGGAGTGTCACCGGCGGCAGGGTCGTATGGCCAGATGCTGTGGGGACTAGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006950 GO:0008150 GO:0008515 GO:0008643 GO:0009611 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0022857 GO:0034219 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

221

Amino Acids

23.94

Weight (kDa)

6.08

Isoelectric Point (pI)

25.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AciI	CCGC	5 cut(s)	293, 339, 422, 594, 624
AclWI	GGATC	4 cut(s)	216, 356, 369, 511
AcoI	YGGCCR	1 cut(s)	638
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	4 cut(s)	39, 160, 322, 491
AfiI	CCNNNNNNNGG	3 cut(s)	168, 500, 627
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	5, 558
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	2 cut(s)	65, 176
AluI	AGCT	2 cut(s)	65, 176
Alw26I	GTCTC	2 cut(s)	64, 399
AlwI	GGATC	4 cut(s)	216, 356, 369, 511
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	3 cut(s)	304, 581, 638
ApeKI	GCWGC	3 cut(s)	173, 284, 413
ApoI	RAATTY	1 cut(s)	310
Asp718I	GGTACC	1 cut(s)	158
AspA2I	CCTAGG	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	304, 538, 581
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	3 cut(s)	353, 527, 610
AvaII	GGWCC	1 cut(s)	538
AvrII	CCTAGG	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	640
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	185, 271, 400
BccI	CCATC	2 cut(s)	469, 592
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciT130I	CCWGG	2 cut(s)	7, 560
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	64, 399
BfaI	CTAG	3 cut(s)	464, 512, 657
BfoI	RGCGCY	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	5 cut(s)	174, 285, 414, 595, 625
BlnI	CCTAGG	1 cut(s)	511
BlsI	GCNGC	5 cut(s)	175, 286, 415, 596, 626
Bme1390I	CCNGG	3 cut(s)	7, 366, 560
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	3 cut(s)	304, 538, 581
BmiI	GGNNCC	4 cut(s)	14, 160, 363, 539
BmrFI	CCNGG	3 cut(s)	7, 366, 560
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	3 cut(s)	251, 545, 634
BmuI	ACTGGG	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	511, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 500, 627
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	2 cut(s)	353, 502
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	7, 560
BseDI	CCNNGG	2 cut(s)	511, 559
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	3 cut(s)	168, 500, 627
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	75, 400
BseNI	ACTGG	2 cut(s)	353, 502
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	185, 271, 400
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	248
BshFI	GGCC	3 cut(s)	306, 583, 640
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	365, 621
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	168, 500, 627
BsmAI	GTCTC	2 cut(s)	64, 399
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	306, 583, 640
Bso31I	GGTCTC	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	208, 361, 382, 503
BspACI	CCGC	5 cut(s)	293, 339, 422, 594, 624
BspANI	GGCC	3 cut(s)	306, 583, 640
BspCNI	CTCAG	2 cut(s)	74, 399
BspLI	GGNNCC	4 cut(s)	14, 160, 363, 539
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	4 cut(s)	216, 356, 369, 511
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	2 cut(s)	353, 502
BssAI	RCCGGY	1 cut(s)	620
BssECI	CCNNGG	2 cut(s)	511, 559
BssMI	GATC	4 cut(s)	208, 361, 382, 503
BssSI	CACGAG	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	7, 560
Bst4CI	ACNGT	2 cut(s)	226, 410
Bst6I	CTCTTC	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	17, 61, 386
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	4 cut(s)	211, 364, 385, 506
BstMAI	GTCTC	2 cut(s)	64, 399
BstMBI	GATC	4 cut(s)	208, 361, 382, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 419
BstNI	CCWGG	2 cut(s)	7, 560
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	5, 364, 558
BstV1I	GCAGC	3 cut(s)	185, 271, 400
BstX2I	RGATCY	3 cut(s)	208, 361, 503
BstYI	RGATCY	3 cut(s)	208, 361, 503
BsuRI	GGCC	3 cut(s)	306, 583, 640
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	5 cut(s)	231, 262, 394, 415, 495
BveI	ACCTGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	647
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	620
Cfr13I	GGNCC	3 cut(s)	304, 538, 581
Csp6I	GTAC	4 cut(s)	38, 159, 321, 490
CviAII	CATG	2 cut(s)	88, 261
CviJI	RGCY	9 cut(s)	65, 176, 306, 375, 452, 463, 583, 597, 640
CviKI_1	RGCY	9 cut(s)	65, 176, 306, 375, 452, 463, 583, 597, 640
CviQI	GTAC	4 cut(s)	38, 159, 321, 490
DdeI	CTNAG	3 cut(s)	17, 61, 386
DpnI	GATC	4 cut(s)	210, 363, 384, 505
DpnII	GATC	4 cut(s)	208, 361, 382, 503
EaeI	YGGCCR	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	399
Eco47I	GGWCC	1 cut(s)	538
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	5, 558
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	2 cut(s)	91, 264
FaiI	YATR	6 cut(s)	24, 71, 89, 262, 608, 637
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	87, 260
Fnu4HI	GCNGC	5 cut(s)	174, 285, 414, 595, 625
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	5 cut(s)	174, 285, 414, 595, 625
FspBI	CTAG	3 cut(s)	464, 512, 657
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	5 cut(s)	174, 285, 414, 595, 625
GsaI	CCCAGC	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	306, 583, 640
HapII	CCGG	2 cut(s)	365, 621
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	2 cut(s)	91, 264
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HpaII	CCGG	2 cut(s)	365, 621
HphI	GGTGA	3 cut(s)	353, 527, 610
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	1 cut(s)	404
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	2 cut(s)	226, 410
HpyCH4V	TGCA	6 cut(s)	144, 194, 229, 242, 260, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 419
HpyF3I	CTNAG	3 cut(s)	17, 61, 386
Hsp92II	CATG	2 cut(s)	91, 264
HspAI	GCGC	1 cut(s)	282
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	208, 361, 382, 503
Lsp1109I	GCAGC	3 cut(s)	185, 271, 400
LweI	GCATC	3 cut(s)	251, 545, 634
MaeI	CTAG	3 cut(s)	464, 512, 657
MaeIII	GTNAC	2 cut(s)	232, 616
MalI	GATC	4 cut(s)	210, 363, 384, 505
MboI	GATC	4 cut(s)	208, 361, 382, 503
MboII	GAAGA	3 cut(s)	389, 392, 542
MflI	RGATCY	3 cut(s)	208, 361, 503
MlsI	TGGCCA	1 cut(s)	640
MluCI	AATT	3 cut(s)	310, 430, 661
MluNI	TGGCCA	1 cut(s)	640
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	6 cut(s)	44, 245, 264, 325, 467, 551
Mox20I	TGGCCA	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	640
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	640
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	365, 621
MspR9I	CCNGG	3 cut(s)	7, 366, 560
MvaI	CCWGG	2 cut(s)	7, 560
MwoI	GCNNNNNNNGC	2 cut(s)	290, 419
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	4 cut(s)	208, 361, 382, 503
NlaIII	CATG	2 cut(s)	91, 264
NlaIV	GGNNCC	4 cut(s)	14, 160, 363, 539
NmuCI	GTSAC	1 cut(s)	616
NspI	RCATGY	1 cut(s)	264
OliI	CACNNNNGTG	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	175, 286, 415, 596, 626
PpuMI	RGGWCCY	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	5, 558
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	2 cut(s)	5, 558
PspN4I	GGNNCC	4 cut(s)	14, 160, 363, 539
PspPI	GGNCC	3 cut(s)	304, 538, 581
PspPPI	RGGWCCY	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	3 cut(s)	208, 361, 503
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	4 cut(s)	39, 160, 322, 491
RsaNI	GTAC	4 cut(s)	38, 159, 321, 490
RseI	CAYNNNNRTG	1 cut(s)	476
SatI	GCNGC	5 cut(s)	174, 285, 414, 595, 625
Sau3AI	GATC	4 cut(s)	208, 361, 382, 503
Sau96I	GGNCC	3 cut(s)	304, 538, 581
ScrFI	CCNGG	3 cut(s)	7, 366, 560
SetI	ASST	9 cut(s)	18, 55, 67, 152, 160, 178, 234, 336, 517
SfaNI	GCATC	3 cut(s)	251, 545, 634
SgrAI	CRCCGGYG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	310, 430, 661
SsiI	CCGC	5 cut(s)	293, 339, 422, 594, 624
SspMI	CTAG	3 cut(s)	464, 512, 657
StyD4I	CCNGG	3 cut(s)	5, 364, 558
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	2 cut(s)	226, 410
TaqI	TCGA	2 cut(s)	543, 553
TasI	AATT	3 cut(s)	310, 430, 661
TauI	GCSGC	2 cut(s)	597, 627
TscAI	CASTG	5 cut(s)	231, 262, 394, 415, 502
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	3 cut(s)	173, 284, 413
Tsp45I	GTSAC	1 cut(s)	616
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	5 cut(s)	231, 262, 394, 415, 502
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmaJI	CCTAGG	1 cut(s)	511
XspI	CTAG	3 cut(s)	464, 512, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.