Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

22556216 .. 22556884

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012806

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGAAAATCTCAGGTTTCGGCCTCCTGATCTTCGTCTTCGTTGTCTTCGGAGGTAGTTCTTGTGAAAAGAGTTTGGGTGCGGCTGAGGCTGTGTTGGGAGTTTTCTTCTGGTTGGATGGCATGACGTTGTTGGTGTCGGGTCCGATTTGTGGATTTATTGGTGTTGACGACTGTTGTGATGGTGATTGGGTTTGCTCTCTGGCGTTTGTGGCGGACGGTGGAGAATGGATTGGTTCCCAATCTGGGAAGCTGCGGCCGTCCGGTGGTGTGGGGTGGTTGGGTTCGATCAAGTCTGGTGTGATGGAGGCAGCCGTTACAAGATCGGCTCTCTCCGTGGGTTGGTGGTGGCTTCGAGTCCTCGATTTGGAGAGGACGAACGTCGCAACTACTGATGGAGACGGTGCACTCCAACGGTGGCGTAGCTCCGCTTGCCGGAGTCAAGCTGGTGGACTGGGTGCCCTGAGCACTTTTTTAGGGACTGGAATTGGGCCTGTTGTCTGGTATCAGGGGTTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.12

Weight (kDa)

4.83

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AciI	CCGC	4 cut(s)	83, 215, 256, 429
AcoI	YGGCCR	1 cut(s)	257
AfiI	CCNNNNNNNGG	6 cut(s)	152, 246, 266, 342, 367, 435
AluBI	AGCT	3 cut(s)	253, 426, 446
AluI	AGCT	3 cut(s)	253, 426, 446
Alw21I	GWGCWC	2 cut(s)	409, 470
Alw26I	GTCTC	1 cut(s)	393
Alw44I	GTGCAC	1 cut(s)	405
AoxI	GGCC	3 cut(s)	22, 257, 491
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	2 cut(s)	253, 311
AspS9I	GGNCC	2 cut(s)	143, 491
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	2 cut(s)	409, 463
BanI	GGYRCC	1 cut(s)	458
BbsI	GAAGAC	2 cut(s)	31, 40
Bbv12I	GWGCWC	2 cut(s)	409, 470
BbvCI	CCTCAGC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	240, 323
BccI	CCATC	4 cut(s)	113, 176, 298, 389
BceAI	ACGGC	2 cut(s)	244, 299
BcoDI	GTCTC	1 cut(s)	393
BisI	GCNGC	4 cut(s)	84, 254, 257, 312
BlsI	GCNGC	4 cut(s)	85, 255, 258, 313
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	143, 491
BmiI	GGNNCC	3 cut(s)	144, 238, 460
BmrI	ACTGGG	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	464
BoxI	GACNNNNGTC	1 cut(s)	380
BpiI	GAAGAC	2 cut(s)	31, 40
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu10I	CCTNAGC	2 cut(s)	87, 464
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	6 cut(s)	152, 246, 266, 342, 367, 435
Bse1I	ACTGG	2 cut(s)	459, 487
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	6 cut(s)	152, 246, 266, 342, 367, 435
BseMII	CTCAG	3 cut(s)	27, 78, 455
BseNI	ACTGG	2 cut(s)	459, 487
BseSI	GKGCMC	2 cut(s)	409, 463
BseX3I	CGGCCG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	240, 323
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	3 cut(s)	24, 259, 493
BshNI	GGYRCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	409, 470
BsiSI	CCGG	2 cut(s)	264, 436
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	6 cut(s)	152, 246, 266, 342, 367, 435
BsmAI	GTCTC	1 cut(s)	393
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	24, 259, 493
Bsp1286I	GDGCHC	3 cut(s)	409, 463, 470
Bsp143I	GATC	3 cut(s)	30, 288, 323
BspACI	CCGC	4 cut(s)	83, 215, 256, 429
BspANI	GGCC	3 cut(s)	24, 259, 493
BspCNI	CTCAG	3 cut(s)	26, 79, 456
BspLI	GGNNCC	3 cut(s)	144, 238, 460
BspT107I	GGYRCC	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	459, 487
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	3 cut(s)	30, 288, 323
Bst4CI	ACNGT	4 cut(s)	176, 221, 404, 417
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	13, 87, 464
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	3 cut(s)	33, 291, 326
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	3 cut(s)	30, 288, 323
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 212, 432
BstPAI	GACNNNNGTC	1 cut(s)	380
BstSLI	GKGCMC	2 cut(s)	409, 463
BstV1I	GCAGC	2 cut(s)	240, 323
BstV2I	GAAGAC	2 cut(s)	31, 40
BstZI	CGGCCG	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	24, 259, 493
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	143, 491
CviAII	CATG	1 cut(s)	124
DdeI	CTNAG	3 cut(s)	13, 87, 464
DpnI	GATC	3 cut(s)	32, 290, 325
DpnII	GATC	3 cut(s)	30, 288, 323
EaeI	YGGCCR	1 cut(s)	257
EagI	CGGCCG	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	230
EclXI	CGGCCG	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	143
Eco52I	CGGCCG	1 cut(s)	257
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	1 cut(s)	127
FaiI	YATR	1 cut(s)	125
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	1 cut(s)	123
Fnu4HI	GCNGC	4 cut(s)	84, 254, 257, 312
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	84, 254, 257, 312
GluI	GCNGC	4 cut(s)	84, 254, 257, 312
HaeIII	GGCC	3 cut(s)	24, 259, 493
HapII	CCGG	2 cut(s)	264, 436
Hin1II	CATG	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	357, 439
HpaII	CCGG	2 cut(s)	264, 436
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	169, 407, 452
Hpy188I	TCNGA	2 cut(s)	53, 147
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	3 cut(s)	169, 407, 452
Hpy99I	CGWCG	1 cut(s)	386
HpyCH4III	ACNGT	4 cut(s)	176, 221, 404, 417
HpyCH4IV	ACGT	2 cut(s)	128, 381
HpyCH4V	TGCA	2 cut(s)	407, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 212, 432
HpyF3I	CTNAG	3 cut(s)	13, 87, 464
HpySE526I	ACGT	2 cut(s)	128, 381
Hsp92II	CATG	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	30, 288, 323
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	2 cut(s)	240, 323
MaeII	ACGT	2 cut(s)	128, 381
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	3 cut(s)	32, 290, 325
MboI	GATC	3 cut(s)	30, 288, 323
MboII	GAAGA	4 cut(s)	25, 31, 40, 100
MhlI	GDGCHC	3 cut(s)	409, 463, 470
MluCI	AATT	1 cut(s)	486
MlyI	GAGTC	2 cut(s)	366, 448
MmeI	TCCRAC	2 cut(s)	96, 436
MnlI	CCTC	6 cut(s)	35, 47, 82, 301, 366, 371
MspI	CCGG	2 cut(s)	264, 436
MwoI	GCNNNNNNNGC	3 cut(s)	89, 212, 432
NdeII	GATC	3 cut(s)	30, 288, 323
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	3 cut(s)	144, 238, 460
PkrI	GCNGC	4 cut(s)	85, 255, 258, 313
PleI	GAGTC	2 cut(s)	365, 447
PpsI	GAGTC	2 cut(s)	365, 447
PshAI	GACNNNNGTC	1 cut(s)	380
PspN4I	GGNNCC	3 cut(s)	144, 238, 460
PspPI	GGNCC	2 cut(s)	143, 491
SatI	GCNGC	4 cut(s)	84, 254, 257, 312
Sau3AI	GATC	3 cut(s)	30, 288, 323
Sau96I	GGNCC	2 cut(s)	143, 491
SchI	GAGTC	2 cut(s)	366, 448
SduI	GDGCHC	3 cut(s)	409, 463, 470
SetI	ASST	7 cut(s)	19, 58, 131, 255, 384, 428, 448
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	4 cut(s)	83, 215, 256, 429
TaaI	ACNGT	4 cut(s)	176, 221, 404, 417
TaiI	ACGT	2 cut(s)	131, 384
TaqI	TCGA	3 cut(s)	287, 355, 363
TasI	AATT	1 cut(s)	486
TauI	GCSGC	2 cut(s)	86, 259
TseI	GCWGC	2 cut(s)	253, 311
TspGWI	ACGGA	1 cut(s)	325
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.