Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002184.1

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

63881 .. 64414

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002184.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggagaaattttcaggcttcggcctcttcatttttactttcgttgtcttaggaggttgtgcctctttggagagaagtttgggcgctgctggggcggtgtcggggggccaattttcttttggtacgagttcggaggtaggcggctattactgggaggagtgggatccgggtagatgctacggctttctcaatgggttgcctcttcccggcggggctgctgatgcgggggctaatccgtgggtggggaagggggtcttcctccggtcggattgcctgttggtgtgggtgttgtgtcccactggtagatcttcgctttatggtgttggtgaccggatttgggtccccaacgttcttcgatgccaagtttctggtggggttttcaacggtgaagcacgcatagagcaggatgtcattgcttcagtctggtggtgtccgtaccacaggtcaattggtggtgcagatctggctcgggattgggttgaggctcttccctatgcggagttcgtcgtcagtcaaatttggagtccgttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.1

Weight (kDa)

4.77

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	95, 141, 210, 224, 497
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	2 cut(s)	158, 171
AcsI	RAATTY	2 cut(s)	8, 516
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	124, 437
AfiI	CCNNNNNNNGG	4 cut(s)	206, 242, 265, 337
AgsI	TTSAA	1 cut(s)	382
AlwI	GGATC	2 cut(s)	158, 171
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	2 cut(s)	22, 106
ApeKI	GCWGC	2 cut(s)	86, 215
ApoI	RAATTY	2 cut(s)	8, 516
ArsI	GACNNNNNNTTYG	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	106, 340
AsuC2I	CCSGG	2 cut(s)	168, 207
AsuHPI	GGTGA	2 cut(s)	338, 398
AvaI	CYCGRG	1 cut(s)	468
AvaII	GGWCC	1 cut(s)	340
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	73, 202
BceAI	ACGGC	1 cut(s)	196
BcnI	CCSGG	2 cut(s)	168, 207
BfaI	CTAG	1 cut(s)	532
BfoI	RGCGCY	1 cut(s)	87
BglII	AGATCT	2 cut(s)	305, 460
BisI	GCNGC	3 cut(s)	87, 142, 216
BlsI	GCNGC	3 cut(s)	88, 143, 217
Bme1390I	CCNGG	2 cut(s)	168, 207
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	468
BmgT120I	GGNCC	2 cut(s)	106, 340
BmiI	GGNNCC	4 cut(s)	107, 165, 341, 342
BmrFI	CCNGG	2 cut(s)	168, 207
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	164, 211, 347
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	247
BpuMI	CCSGG	2 cut(s)	168, 207
BsaJI	CCNNGG	1 cut(s)	236
BsaWI	WCCGGW	2 cut(s)	261, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 242, 265, 337
Bse1I	ACTGG	2 cut(s)	155, 304
Bse3DI	GCAATG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	4 cut(s)	206, 242, 265, 337
BseMI	GCAATG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	155, 304
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	73, 202
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	24, 108
BsiEI	CGRYCG	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	4 cut(s)	167, 207, 262, 331
BslFI	GGGAC	2 cut(s)	279, 326
BslI	CCNNNNNNNGG	4 cut(s)	206, 242, 265, 337
BsmFI	GGGAC	2 cut(s)	279, 326
BsnI	GGCC	2 cut(s)	24, 108
BsoBI	CYCGRG	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	163, 305, 460
BspACI	CCGC	5 cut(s)	95, 141, 210, 224, 497
BspANI	GGCC	2 cut(s)	24, 108
BspLI	GGNNCC	4 cut(s)	107, 165, 341, 342
BspPI	GGATC	2 cut(s)	158, 171
BspQI	GCTCTTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	155, 304
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	3 cut(s)	163, 305, 460
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	3 cut(s)	32, 207, 492
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	412
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	166, 308, 463
BstMBI	GATC	3 cut(s)	163, 305, 460
BstMCI	CGRYCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 221, 464
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	166, 205
BstV1I	GCAGC	2 cut(s)	73, 202
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	3 cut(s)	163, 305, 460
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	3 cut(s)	163, 305, 460
BsuRI	GGCC	2 cut(s)	24, 108
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	394
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	106, 340
Csp6I	GTAC	2 cut(s)	123, 436
CviJI	RGCY	9 cut(s)	18, 24, 108, 144, 183, 215, 230, 467, 485
CviKI_1	RGCY	9 cut(s)	18, 24, 108, 144, 183, 215, 230, 467, 485
CviQI	GTAC	2 cut(s)	123, 436
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	3 cut(s)	165, 307, 462
DpnII	GATC	3 cut(s)	163, 305, 460
Eam1104I	CTCTTC	3 cut(s)	32, 207, 492
EarI	CTCTTC	3 cut(s)	32, 207, 492
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	468
Eco91I	GGTNACC	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	326
FaiI	YATR	3 cut(s)	318, 398, 495
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	279, 326
FauI	CCCGC	2 cut(s)	203, 217
Fnu4HI	GCNGC	3 cut(s)	87, 142, 216
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	87, 142, 216
FspBI	CTAG	1 cut(s)	532
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	87, 142, 216
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	24, 108
HapII	CCGG	4 cut(s)	167, 207, 262, 331
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	523
HpaII	CCGG	4 cut(s)	167, 207, 262, 331
HphI	GGTGA	2 cut(s)	338, 398
Hpy188I	TCNGA	2 cut(s)	133, 268
Hpy188III	TCNNGA	1 cut(s)	470
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 221, 464
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	1 cut(s)	348
HspAI	GCGC	1 cut(s)	84
KflI	GGGWCCC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	163, 305, 460
LguI	GCTCTTC	1 cut(s)	492
Lsp1109I	GCAGC	2 cut(s)	73, 202
LweI	GCATC	3 cut(s)	164, 211, 347
MaeI	CTAG	1 cut(s)	532
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	3 cut(s)	165, 307, 462
MboI	GATC	3 cut(s)	163, 305, 460
MboII	GAAGA	6 cut(s)	19, 194, 247, 300, 344, 479
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	3 cut(s)	163, 305, 460
MluCI	AATT	4 cut(s)	8, 110, 447, 516
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	8 cut(s)	35, 47, 73, 127, 148, 210, 269, 475
MspI	CCGG	4 cut(s)	167, 207, 262, 331
MspR9I	CCNGG	2 cut(s)	168, 207
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	92, 221, 464
NciI	CCSGG	2 cut(s)	168, 207
NdeII	GATC	3 cut(s)	163, 305, 460
NlaIV	GGNNCC	4 cut(s)	107, 165, 341, 342
NmuCI	GTSAC	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	492
PkrI	GCNGC	3 cut(s)	88, 143, 217
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
PpuMI	RGGWCCY	1 cut(s)	340
Psp1406I	AACGTT	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	4 cut(s)	107, 165, 341, 342
PspPI	GGNCC	2 cut(s)	106, 340
PspPPI	RGGWCCY	1 cut(s)	340
PsuI	RGATCY	3 cut(s)	163, 305, 460
RsaI	GTAC	2 cut(s)	124, 437
RsaNI	GTAC	2 cut(s)	123, 436
SapI	GCTCTTC	1 cut(s)	492
SatI	GCNGC	3 cut(s)	87, 142, 216
Sau3AI	GATC	3 cut(s)	163, 305, 460
Sau96I	GGNCC	2 cut(s)	106, 340
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	168, 207
SetI	ASST	4 cut(s)	58, 138, 351, 446
SfaNI	GCATC	3 cut(s)	164, 211, 347
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	4 cut(s)	8, 110, 447, 516
SsiI	CCGC	5 cut(s)	95, 141, 210, 224, 497
SspMI	CTAG	1 cut(s)	532
StyD4I	CCNGG	2 cut(s)	166, 205
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	355
TasI	AATT	4 cut(s)	8, 110, 447, 516
TauI	GCSGC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	86, 215
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	3 cut(s)	225, 423, 516
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	2 cut(s)	8, 516
XcmI	CCANNNNNNNNNTGG	3 cut(s)	116, 368, 446
XspI	CTAG	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.