Rh7DG253600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001941
Physical Location & Seq
Forward (+)
26364389 .. 26381626
17238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG253600.1

Sequence Viewer

Length: 228 bp
ATGAAACCCAGTCAATCAAGCAGTGCATGTTTGGAGAGGAGTTTGGGCGCTGCTGGGGCGGTGTCGGCGGGCCAAAATTCTGTTGGTACTGGTTCGGAGGTAAGCAGTGATTATTGGGAGAAGTGGGATCTGAGTAGAAGCCTTGTTGATCTCAGTGGGTCTCCTCTTCCCGGCAGTGCTGCTAAAGCGGTGGGGAATCGGTGGGTGCGAAACGGGGCTATCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.67

Weight (kDa)

7.92

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 59, 68, 188
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 1 cut(s) 76
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 1 cut(s) 135
AoxI GGCC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 50, 179
ApoI RAATTY 1 cut(s) 76
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 171
BbvI GCAGC 2 cut(s) 37, 166
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 1 cut(s) 226
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 2 cut(s) 51, 180
BlsI GCNGC 2 cut(s) 52, 181
Bme1390I CCNGG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 3
BmuI ACTGGG 1 cut(s) 3
BpuMI CCSGG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 9, 94
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 122, 166
BseNI ACTGG 2 cut(s) 9, 94
BseRI GAGGAG 2 cut(s) 52, 153
BseXI GCAGC 2 cut(s) 37, 166
BseYI CCCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 127, 148
BspACI CCGC 3 cut(s) 59, 68, 188
BspANI GGCC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 123, 165
BspPI GGATC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 165
BsrI ACTGG 2 cut(s) 9, 94
BssMI GATC 2 cut(s) 127, 148
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 131, 152
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 2 cut(s) 130, 151
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 2 cut(s) 127, 148
BstMWI GCNNNNNNNGC 3 cut(s) 56, 65, 185
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 37, 166
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 72
BtsI GCAGTG 3 cut(s) 28, 112, 181
BtsIMutI CAGTG 4 cut(s) 28, 112, 160, 181
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 87
CviAII CATG 1 cut(s) 27
CviJI RGCY 3 cut(s) 72, 141, 218
CviKI_1 RGCY 3 cut(s) 72, 141, 218
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 2 cut(s) 131, 152
DpnI GATC 2 cut(s) 129, 150
DpnII GATC 2 cut(s) 127, 148
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 165
FaeI CATG 1 cut(s) 30
FaiI YATR 1 cut(s) 28
FatI CATG 1 cut(s) 26
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 51, 180
Fsp4HI GCNGC 2 cut(s) 51, 180
FspBI CTAG 1 cut(s) 226
GlaI GCGC 1 cut(s) 49
GluI GCNGC 2 cut(s) 51, 180
GsaI CCCAGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 171
HhaI GCGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 30
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 171
Hpy188I TCNGA 2 cut(s) 97, 132
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 65, 185
HpyF3I CTNAG 2 cut(s) 131, 152
Hsp92II CATG 1 cut(s) 30
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 2 cut(s) 127, 148
LpnPI CCDG 4 cut(s) 22, 39, 75, 184
Lsp1109I GCAGC 2 cut(s) 37, 166
MaeI CTAG 1 cut(s) 226
MalI GATC 2 cut(s) 129, 150
MboI GATC 2 cut(s) 127, 148
MboII GAAGA 1 cut(s) 158
MflI RGATCY 1 cut(s) 127
MluCI AATT 1 cut(s) 76
MnlI CCTC 3 cut(s) 30, 91, 174
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 56, 65, 185
NciI CCSGG 1 cut(s) 171
NdeII GATC 2 cut(s) 127, 148
NlaIII CATG 1 cut(s) 30
NspI RCATGY 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 52, 181
PspFI CCCAGC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SatI GCNGC 2 cut(s) 51, 180
Sau3AI GATC 2 cut(s) 127, 148
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 171
SetI ASST 1 cut(s) 102
SgeI CNNG 9 cut(s) 21, 30, 39, 66, 81, 102, 155, 182, 183
Sse9I AATT 1 cut(s) 76
SsiI CCGC 3 cut(s) 59, 68, 188
SspMI CTAG 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 169
TasI AATT 1 cut(s) 76
TfiI GAWTC 1 cut(s) 196
TscAI CASTG 4 cut(s) 28, 112, 160, 181
TseI GCWGC 2 cut(s) 50, 179
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 4 cut(s) 28, 112, 160, 181
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 30
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XspI CTAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.