Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

36849507 .. 36850145

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG221300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGATTTTGGGCTGTTTGCTCTCTTTTTCGCTTGTCTGGGTGGTGTTTGTTCTGGTTTCTCTTCGATTTCTAGTGCAGGGATCTCTCCGTTGAGTGATATTATCGGATTCGGTGGTAGTACGGCTACGGGTCTCGGACGGGCAGACTCGCCGGATCTGGTGGTGGAGGACCGAGTATCGGTGTCGGTCCAATTTTCTTTTGGTTCGGGTTCGGAGGTAGGCGGCTTTTGTTGGGAGGAGTGGGATCCGGGTAGATGCTACGGTTTTCTCTATGGGTTGCCTCTTCCCAGCCGGGATGCTAATGTGATGGCAATTCGGTGGGTGCGGAAAGGGGTATTCCTCTGGCCGGATTGCATGGTGTTATGGGTGTTGTGCCCCACAGGTAGAGCTTTGAATTGTGGTGTTGGTGACCGGTTTTGGGTCCCCGACGTTCTTCGATGCCAAGGTGGTATGGTAGACGACGCCCTATCGATTGGTGGATTGATGGGGATTGGTTGTGTCACCGGCGACGGGGTCGTTTGGCCAGATGTAGTGGGTGATGGGAGACAATCTAGTGGGCTATGGGCTCAAGTCGTCTTGGACTTGGGTAGGAACTGCAATGGGTGGACAAGAGCTGCTGCTTTTGGGTCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.3

Weight (kDa)

4.42

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	2 cut(s)	225, 328
AclWI	GGATC	4 cut(s)	92, 165, 242, 255
AcoI	YGGCCR	2 cut(s)	347, 524
AcyI	GRCGYC	1 cut(s)	465
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	4 cut(s)	181, 349, 421, 513
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	397
AluBI	AGCT	2 cut(s)	392, 617
AluI	AGCT	2 cut(s)	392, 617
Alw26I	GTCTC	2 cut(s)	140, 541
AlwI	GGATC	4 cut(s)	92, 165, 242, 255
AoxI	GGCC	2 cut(s)	347, 524
ApeKI	GCWGC	2 cut(s)	617, 620
AsiGI	ACCGGT	1 cut(s)	414
AspS9I	GGNCC	3 cut(s)	172, 190, 424
AsuC2I	CCSGG	2 cut(s)	252, 296
AsuHPI	GGTGA	3 cut(s)	422, 496, 551
AvaII	GGWCC	3 cut(s)	172, 190, 424
BaeGI	GKGCMC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	571
BbvI	GCAGC	2 cut(s)	604, 607
BccI	CCATC	3 cut(s)	304, 481, 536
BceAI	ACGGC	1 cut(s)	141
BcnI	CCSGG	2 cut(s)	252, 296
BcoDI	GTCTC	2 cut(s)	140, 541
BfaI	CTAG	2 cut(s)	75, 555
BisI	GCNGC	3 cut(s)	226, 618, 621
BlsI	GCNGC	3 cut(s)	227, 619, 622
Bme1390I	CCNGG	2 cut(s)	252, 296
Bme18I	GGWCC	3 cut(s)	172, 190, 424
BmgT120I	GGNCC	3 cut(s)	172, 190, 424
BmiI	GGNNCC	3 cut(s)	249, 425, 426
BmrFI	CCNGG	2 cut(s)	252, 296
BmsI	GCATC	3 cut(s)	248, 289, 431
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	2 cut(s)	252, 296
Bsa29I	ATCGAT	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 349, 421, 513
Bse118I	RCCGGY	2 cut(s)	414, 506
Bse3DI	GCAATG	1 cut(s)	607
BseCI	ATCGAT	1 cut(s)	473
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	4 cut(s)	181, 349, 421, 513
BseMI	GCAATG	1 cut(s)	607
BseRI	GAGGAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	604, 607
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	349, 526
BshTI	ACCGGT	1 cut(s)	414
BshVI	ATCGAT	1 cut(s)	473
BsiSI	CCGG	6 cut(s)	155, 251, 295, 350, 415, 507
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	4 cut(s)	181, 349, 421, 513
BsmAI	GTCTC	2 cut(s)	140, 541
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	349, 526
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	2 cut(s)	380, 571
Bsp143I	GATC	3 cut(s)	84, 157, 247
BspACI	CCGC	2 cut(s)	225, 328
BspANI	GGCC	2 cut(s)	349, 526
BspDI	ATCGAT	1 cut(s)	473
BspLI	GGNNCC	3 cut(s)	249, 425, 426
BspPI	GGATC	4 cut(s)	92, 165, 242, 255
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	607
BsrFI	RCCGGY	2 cut(s)	414, 506
BssAI	RCCGGY	2 cut(s)	414, 506
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	3 cut(s)	84, 157, 247
BssNI	GRCGYC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	2 cut(s)	70, 291
BstACI	GRCGYC	1 cut(s)	465
BstEII	GGTNACC	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	3 cut(s)	87, 160, 250
BstMAI	GTCTC	2 cut(s)	140, 541
BstMBI	GATC	3 cut(s)	84, 157, 247
BstPI	GGTNACC	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	250, 294
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	604, 607
BstX2I	RGATCY	3 cut(s)	84, 157, 247
BstYI	RGATCY	3 cut(s)	84, 157, 247
Bsu15I	ATCGAT	1 cut(s)	473
BsuRI	GGCC	2 cut(s)	349, 526
BsuTUI	ATCGAT	1 cut(s)	473
BtsCI	GGATG	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	414, 506
Cfr13I	GGNCC	3 cut(s)	172, 190, 424
ClaI	ATCGAT	1 cut(s)	473
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	123
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	1 cut(s)	358
CviQI	GTAC	1 cut(s)	123
DpnI	GATC	3 cut(s)	86, 159, 249
DpnII	GATC	3 cut(s)	84, 157, 247
EaeI	YGGCCR	2 cut(s)	347, 524
Eam1104I	CTCTTC	2 cut(s)	70, 291
EarI	CTCTTC	2 cut(s)	70, 291
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	3 cut(s)	172, 190, 424
Eco91I	GGTNACC	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	1 cut(s)	361
FaiI	YATR	6 cut(s)	276, 359, 367, 455, 565, 637
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	226, 618, 621
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	3 cut(s)	226, 618, 621
FspBI	CTAG	2 cut(s)	75, 555
GluI	GCNGC	3 cut(s)	226, 618, 621
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	349, 526
HapII	CCGG	6 cut(s)	155, 251, 295, 350, 415, 507
HgaI	GACGC	1 cut(s)	473
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	361
HinfI	GANTC	2 cut(s)	111, 149
HpaII	CCGG	6 cut(s)	155, 251, 295, 350, 415, 507
HphI	GGTGA	3 cut(s)	422, 496, 551
Hpy166II	GTNNAC	2 cut(s)	460, 609
Hpy188I	TCNGA	3 cut(s)	110, 140, 217
Hpy8I	GTNNAC	2 cut(s)	460, 609
Hpy99I	CGWCG	3 cut(s)	434, 467, 515
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	80, 357, 600
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	1 cut(s)	361
KflI	GGGWCCC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	84, 157, 247
Lsp1109I	GCAGC	2 cut(s)	604, 607
LweI	GCATC	3 cut(s)	248, 289, 431
MaeI	CTAG	2 cut(s)	75, 555
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	410, 502
MalI	GATC	3 cut(s)	86, 159, 249
MboI	GATC	3 cut(s)	84, 157, 247
MboII	GAAGA	3 cut(s)	57, 278, 428
MflI	RGATCY	3 cut(s)	84, 157, 247
MhlI	GDGCHC	2 cut(s)	380, 571
MlsI	TGGCCA	1 cut(s)	526
MluCI	AATT	3 cut(s)	194, 315, 397
MluNI	TGGCCA	1 cut(s)	526
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	163, 211, 232, 294, 353
Mox20I	TGGCCA	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	526
Msp20I	TGGCCA	1 cut(s)	526
MspI	CCGG	6 cut(s)	155, 251, 295, 350, 415, 507
MspR9I	CCNGG	2 cut(s)	252, 296
NciI	CCSGG	2 cut(s)	252, 296
NdeII	GATC	3 cut(s)	84, 157, 247
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	3 cut(s)	249, 425, 426
NmuCI	GTSAC	2 cut(s)	410, 502
PfeI	GAWTC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	515
PinAI	ACCGGT	1 cut(s)	414
PkrI	GCNGC	3 cut(s)	227, 619, 622
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	410
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	3 cut(s)	249, 425, 426
PspPI	GGNCC	3 cut(s)	172, 190, 424
PspPPI	RGGWCCY	1 cut(s)	424
PsuI	RGATCY	3 cut(s)	84, 157, 247
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SatI	GCNGC	3 cut(s)	226, 618, 621
Sau3AI	GATC	3 cut(s)	84, 157, 247
Sau96I	GGNCC	3 cut(s)	172, 190, 424
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	252, 296
SduI	GDGCHC	2 cut(s)	380, 571
SetI	ASST	6 cut(s)	222, 388, 394, 435, 451, 619
SfaNI	GCATC	3 cut(s)	248, 289, 431
SgrAI	CRCCGGYG	1 cut(s)	506
SinI	GGWCC	3 cut(s)	172, 190, 424
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	194, 315, 397
SsiI	CCGC	2 cut(s)	225, 328
SspMI	CTAG	2 cut(s)	75, 555
StyD4I	CCNGG	2 cut(s)	250, 294
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	68, 439, 473
TaqII	GACCGA	2 cut(s)	178, 189
TasI	AATT	3 cut(s)	194, 315, 397
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	410, 502
TseI	GCWGC	2 cut(s)	617, 620
Tsp45I	GTSAC	2 cut(s)	410, 502
TspGWI	ACGGA	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	515
VpaK11BI	GGWCC	3 cut(s)	172, 190, 424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	2 cut(s)	75, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.