Rmu_ssc0000281.1_g000033

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000281.1
Physical Location & Seq
Forward (+)
128050 .. 130832
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000281.1_g000033.1.cds

Sequence Viewer

Length: 1116 bp
atgcttttgcaaaggaaatttgctttcaccggaggatgtttcgctcgcctagatttgataagcttatgcctcttaaggaatttactgatgcctcgaatggatatctcattgacgacacctgcgtgcttgcatggagctgaggttttcgtttgtaaagaaagaacaaaaggcaaaagagagtatttatcaaagataaatgatgcctttatctgcaagcaggtctggaaggttaagaatttttcaaagcggataaagctctatcccaagggatttggcaaaggaaatggtacttatctttctattttcttggcattggctgattggaaaccaattcctcctgtgtccaaaatatttgtagcgtttaccctgcgcatcgtaggccaaatgaatgccaagcacaagtcttggacaggggttaagaacgcagcctttgcggccgtcgtttctcaatatcttctctattcgttagagaccatggcagatcttgggctgtttgctctctttttcctttgtctgggtggtgtttgttctggtttctcttcaatttctagtgcagggatctctccgttgagtgatattatcggatttggtggtagtacggctaagggtctcggacaagcagactcgccggatctggtggtggaggaccgagtgtcgatgtcggtccaattttcttttggttcgggttcggtggtaggcgggttttgctgggaggaatgtgatcctggtagatgttatagttttctctatgggttgcctcttccctgcggggatgctgatgtgatggcgattcggtgggggtggaaggggctattcctctggccggattgcgtggtgttgtgccccactggtagagatttgagttgtggtgttggtgaccggttttgggtccccgatgctcttcgatgccgaggtggtatggtagatgacactctatcgattggtggcttgatggggattggttgtgtcaccggcggcggggtcgtttggccagatgtagtgggtgatgggagacaatctagtgggctatgggcccaagtcgtcttggacttgggtaggaactgcaatgggtggacaagagctgctgtttttgggtccccacagttttggatctga

Protein Analysis

371

Amino Acids

40.19

Weight (kDa)

8.79

Isoelectric Point (pI)

29.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc16I TGCGCA 1 cut(s) 371
Acc36I ACCTGC 2 cut(s) 127, 208
AciI CCGC 6 cut(s) 247, 434, 699, 768, 975, 978
AclWI GGATC 3 cut(s) 566, 639, 716
AcoI YGGCCR 3 cut(s) 435, 821, 989
AcsI RAATTY 3 cut(s) 17, 79, 235
AfaI GTAC 2 cut(s) 289, 598
AfiI CCNNNNNNNGG 4 cut(s) 514, 823, 886, 978
AflII CTTAAG 1 cut(s) 73
AgeI ACCGGT 1 cut(s) 879
AgsI TTSAA 2 cut(s) 243, 543
AhdI GACNNNNNGTC 1 cut(s) 652
AjnI CCWGG 1 cut(s) 724
AleI CACNNNNGTG 1 cut(s) 121
AluBI AGCT 4 cut(s) 63, 137, 256, 1082
AluI AGCT 4 cut(s) 63, 137, 256, 1082
Alw26I GTCTC 3 cut(s) 464, 614, 1006
AlwI GGATC 3 cut(s) 566, 639, 716
AoxI GGCC 5 cut(s) 379, 435, 821, 989, 1032
ApaI GGGCCC 1 cut(s) 1036
ApeKI GCWGC 2 cut(s) 425, 1082
ApoI RAATTY 3 cut(s) 17, 79, 235
AsiGI ACCGGT 1 cut(s) 879
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 6 cut(s) 646, 664, 889, 1032, 1033, 1095
AsuHPI GGTGA 4 cut(s) 19, 887, 961, 1016
AvaII GGWCC 4 cut(s) 646, 664, 889, 1095
BaeGI GKGCMC 2 cut(s) 845, 1036
BalI TGGCCA 1 cut(s) 991
BanII GRGCYC 1 cut(s) 1036
BbvCI CCTCAGC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 437, 1069
BccI CCATC 3 cut(s) 778, 946, 1001
BceAI ACGGC 2 cut(s) 422, 615
BciT130I CCWGG 1 cut(s) 726
BcoDI GTCTC 3 cut(s) 464, 614, 1006
BfaI CTAG 3 cut(s) 50, 549, 1020
BfrI CTTAAG 1 cut(s) 73
BfuAI ACCTGC 2 cut(s) 127, 208
BglI GCCNNNNNGGC 1 cut(s) 434
BglII AGATCT 1 cut(s) 481
BisI GCNGC 4 cut(s) 426, 435, 976, 1083
BlsI GCNGC 4 cut(s) 427, 436, 977, 1084
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 4 cut(s) 646, 664, 889, 1095
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgT120I GGNCC 6 cut(s) 646, 664, 889, 1032, 1033, 1095
BmiI GGNNCC 5 cut(s) 890, 891, 1034, 1096, 1097
BmrFI CCNGG 1 cut(s) 726
BmsI GCATC 6 cut(s) 78, 190, 381, 763, 886, 896
Bpu10I CCTNAGC 2 cut(s) 138, 603
Bsa29I ATCGAT 1 cut(s) 938
BsaI GGTCTC 2 cut(s) 464, 614
BsaJI CCNNGG 3 cut(s) 264, 474, 910
BsaWI WCCGGW 2 cut(s) 29, 879
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 4 cut(s) 514, 823, 886, 978
Bse118I RCCGGY 2 cut(s) 879, 971
Bse1I ACTGG 1 cut(s) 853
Bse3DI GCAATG 1 cut(s) 1072
BseBI CCWGG 1 cut(s) 726
BseCI ATCGAT 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 264, 474, 910
BseGI GGATG 2 cut(s) 41, 778
BseLI CCNNNNNNNGG 4 cut(s) 514, 823, 886, 978
BseMI GCAATG 1 cut(s) 1072
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 853
BseSI GKGCMC 2 cut(s) 845, 1036
BseX3I CGGCCG 1 cut(s) 435
BseXI GCAGC 2 cut(s) 437, 1069
BseYI CCCAGC 1 cut(s) 708
BsgI GTGCAG 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 5 cut(s) 381, 437, 823, 991, 1034
BshTI ACCGGT 1 cut(s) 879
BshVI ATCGAT 1 cut(s) 938
BsiEI CGRYCG 1 cut(s) 438
BsiSI CCGG 5 cut(s) 30, 629, 824, 880, 972
BslFI GGGAC 2 cut(s) 875, 1081
BslI CCNNNNNNNGG 4 cut(s) 514, 823, 886, 978
BsmAI GTCTC 3 cut(s) 464, 614, 1006
BsmFI GGGAC 2 cut(s) 875, 1081
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 5 cut(s) 381, 437, 823, 991, 1034
Bso31I GGTCTC 2 cut(s) 464, 614
Bsp120I GGGCCC 1 cut(s) 1032
Bsp1286I GDGCHC 2 cut(s) 845, 1036
Bsp143I GATC 5 cut(s) 481, 558, 631, 721, 1110
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 6 cut(s) 247, 434, 699, 768, 975, 978
BspANI GGCC 5 cut(s) 381, 437, 823, 991, 1034
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 1 cut(s) 938
BspLI GGNNCC 5 cut(s) 890, 891, 1034, 1096, 1097
BspMI ACCTGC 2 cut(s) 127, 208
BspPI GGATC 3 cut(s) 566, 639, 716
BspQI GCTCTTC 1 cut(s) 906
BspTI CTTAAG 1 cut(s) 73
BspTNI GGTCTC 2 cut(s) 464, 614
BsrDI GCAATG 1 cut(s) 1072
BsrFI RCCGGY 2 cut(s) 879, 971
BsrI ACTGG 1 cut(s) 853
BssAI RCCGGY 2 cut(s) 879, 971
BssECI CCNNGG 3 cut(s) 264, 474, 910
BssMI GATC 5 cut(s) 481, 558, 631, 721, 1110
BssT1I CCWWGG 2 cut(s) 264, 474
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 1 cut(s) 1104
Bst6I CTCTTC 3 cut(s) 544, 765, 906
BstAFI CTTAAG 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 4 cut(s) 46, 124, 128, 215
BstDEI CTNAG 2 cut(s) 138, 603
BstDSI CCRYGG 1 cut(s) 474
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 2 cut(s) 41, 778
BstHHI GCGC 1 cut(s) 372
BstKTI GATC 5 cut(s) 484, 561, 634, 724, 1113
BstMAI GTCTC 3 cut(s) 464, 614, 1006
BstMBI GATC 5 cut(s) 481, 558, 631, 721, 1110
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 5 cut(s) 253, 378, 431, 434, 705
BstNI CCWGG 1 cut(s) 726
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 1 cut(s) 724
BstSLI GKGCMC 2 cut(s) 845, 1036
BstV1I GCAGC 2 cut(s) 437, 1069
BstX2I RGATCY 4 cut(s) 481, 558, 631, 1110
BstXI CCANNNNNNTGG 1 cut(s) 1107
BstYI RGATCY 4 cut(s) 481, 558, 631, 1110
BstZI CGGCCG 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 938
BsuRI GGCC 5 cut(s) 381, 437, 823, 991, 1034
BsuTUI ATCGAT 1 cut(s) 938
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 2 cut(s) 41, 778
BtsIMutI CAGTG 1 cut(s) 846
BveI ACCTGC 2 cut(s) 127, 208
Cac8I GCNNGC 4 cut(s) 46, 124, 128, 215
CfoI GCGC 1 cut(s) 372
Cfr10I RCCGGY 2 cut(s) 879, 971
Cfr13I GGNCC 6 cut(s) 646, 664, 889, 1032, 1033, 1095
ClaI ATCGAT 1 cut(s) 938
Csp6I GTAC 2 cut(s) 288, 597
CspAI ACCGGT 1 cut(s) 879
CviAII CATG 2 cut(s) 131, 475
CviQI GTAC 2 cut(s) 288, 597
DdeI CTNAG 2 cut(s) 138, 603
DpnI GATC 5 cut(s) 483, 560, 633, 723, 1112
DpnII GATC 5 cut(s) 481, 558, 631, 721, 1110
DriI GACNNNNNGTC 1 cut(s) 652
EaeI YGGCCR 3 cut(s) 435, 821, 989
EagI CGGCCG 1 cut(s) 435
Eam1104I CTCTTC 3 cut(s) 544, 765, 906
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 3 cut(s) 544, 765, 906
EclXI CGGCCG 1 cut(s) 435
Eco130I CCWWGG 2 cut(s) 264, 474
Eco24I GRGCYC 1 cut(s) 1036
Eco31I GGTCTC 2 cut(s) 464, 614
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 4 cut(s) 646, 664, 889, 1095
Eco52I CGGCCG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 875
EcoO109I RGGNCCY 2 cut(s) 889, 1095
EcoO65I GGTNACC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 724
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 264, 474
EcoT38I GRGCYC 1 cut(s) 1036
ErhI CCWWGG 2 cut(s) 264, 474
FaeI CATG 2 cut(s) 134, 478
FaiI YATR 7 cut(s) 67, 132, 476, 738, 750, 920, 1030
FaqI GGGAC 2 cut(s) 875, 1081
FatI CATG 2 cut(s) 130, 474
FauI CCCGC 3 cut(s) 692, 761, 971
Fnu4HI GCNGC 4 cut(s) 426, 435, 976, 1083
FokI GGATG 2 cut(s) 48, 785
FriOI GRGCYC 1 cut(s) 1036
Fsp4HI GCNGC 4 cut(s) 426, 435, 976, 1083
FspBI CTAG 3 cut(s) 50, 549, 1020
FspI TGCGCA 1 cut(s) 371
GlaI GCGC 1 cut(s) 371
GluI GCNGC 4 cut(s) 426, 435, 976, 1083
GsaI CCCAGC 1 cut(s) 712
HaeIII GGCC 5 cut(s) 381, 437, 823, 991, 1034
HapII CCGG 5 cut(s) 30, 629, 824, 880, 972
HhaI GCGC 1 cut(s) 372
Hin1II CATG 2 cut(s) 134, 478
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 2 cut(s) 623, 790
HpaII CCGG 5 cut(s) 30, 629, 824, 880, 972
HphI GGTGA 4 cut(s) 19, 887, 961, 1016
Hpy166II GTNNAC 2 cut(s) 363, 1074
Hpy188I TCNGA 3 cut(s) 584, 614, 1115
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 2 cut(s) 363, 1074
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 220, 799
HpyCH4III ACNGT 1 cut(s) 1104
HpyCH4V TGCA 5 cut(s) 10, 130, 213, 554, 1065
HpyF10VI GCNNNNNNNGC 5 cut(s) 253, 378, 431, 434, 705
HpyF3I CTNAG 2 cut(s) 138, 603
Hsp92II CATG 2 cut(s) 134, 478
HspAI GCGC 1 cut(s) 370
KflI GGGWCCC 2 cut(s) 889, 1095
Kzo9I GATC 5 cut(s) 481, 558, 631, 721, 1110
LguI GCTCTTC 1 cut(s) 906
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 2 cut(s) 437, 1069
LweI GCATC 6 cut(s) 78, 190, 381, 763, 886, 896
MaeI CTAG 3 cut(s) 50, 549, 1020
MaeIII GTNAC 2 cut(s) 875, 967
MalI GATC 5 cut(s) 483, 560, 633, 723, 1112
MboI GATC 5 cut(s) 481, 558, 631, 721, 1110
MboII GAAGA 4 cut(s) 446, 531, 752, 893
MflI RGATCY 4 cut(s) 481, 558, 631, 1110
MhlI GDGCHC 2 cut(s) 845, 1036
MlsI TGGCCA 1 cut(s) 991
MluCI AATT 6 cut(s) 17, 79, 235, 330, 543, 668
MluNI TGGCCA 1 cut(s) 991
MlyI GAGTC 1 cut(s) 617
Mox20I TGGCCA 1 cut(s) 991
MscI TGGCCA 1 cut(s) 991
MseI TTAA 3 cut(s) 74, 231, 417
MslI CAYNNNNRTG 1 cut(s) 121
Msp20I TGGCCA 1 cut(s) 991
MspCI CTTAAG 1 cut(s) 73
MspI CCGG 5 cut(s) 30, 629, 824, 880, 972
MspR9I CCNGG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 5 cut(s) 253, 378, 431, 434, 705
NcoI CCATGG 1 cut(s) 474
NdeII GATC 5 cut(s) 481, 558, 631, 721, 1110
NlaIII CATG 2 cut(s) 134, 478
NlaIV GGNNCC 5 cut(s) 890, 891, 1034, 1096, 1097
NmeAIII GCCGAG 1 cut(s) 935
NmuCI GTSAC 2 cut(s) 875, 967
NsbI TGCGCA 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 121
PaqCI CACCTGC 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 906
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 790
PinAI ACCGGT 1 cut(s) 879
PkrI GCNGC 4 cut(s) 427, 436, 977, 1084
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
PpuMI RGGWCCY 2 cut(s) 889, 1095
Psp5II RGGWCCY 2 cut(s) 889, 1095
Psp6I CCWGG 1 cut(s) 724
PspEI GGTNACC 1 cut(s) 875
PspFI CCCAGC 1 cut(s) 708
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 5 cut(s) 890, 891, 1034, 1096, 1097
PspOMI GGGCCC 1 cut(s) 1032
PspPI GGNCC 6 cut(s) 646, 664, 889, 1032, 1033, 1095
PspPPI RGGWCCY 2 cut(s) 889, 1095
PsuI RGATCY 4 cut(s) 481, 558, 631, 1110
RsaI GTAC 2 cut(s) 289, 598
RsaNI GTAC 2 cut(s) 288, 597
RseI CAYNNNNRTG 1 cut(s) 121
SapI GCTCTTC 1 cut(s) 906
SaqAI TTAA 3 cut(s) 74, 231, 417
SatI GCNGC 4 cut(s) 426, 435, 976, 1083
Sau3AI GATC 5 cut(s) 481, 558, 631, 721, 1110
Sau96I GGNCC 6 cut(s) 646, 664, 889, 1032, 1033, 1095
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 1 cut(s) 726
SduI GDGCHC 2 cut(s) 845, 1036
SetI ASST 9 cut(s) 65, 121, 139, 144, 222, 231, 258, 916, 1084
SfaNI GCATC 6 cut(s) 78, 190, 381, 763, 886, 896
SgrAI CRCCGGYG 1 cut(s) 971
SinI GGWCC 4 cut(s) 646, 664, 889, 1095
SmiMI CAYNNNNRTG 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 6 cut(s) 17, 79, 235, 330, 543, 668
SsiI CCGC 6 cut(s) 247, 434, 699, 768, 975, 978
SspI AATATT 1 cut(s) 351
SspMI CTAG 3 cut(s) 50, 549, 1020
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 2 cut(s) 264, 474
TaaI ACNGT 1 cut(s) 1104
TaqI TCGA 4 cut(s) 94, 656, 904, 938
TaqII GACCGA 2 cut(s) 652, 663
TasI AATT 6 cut(s) 17, 79, 235, 330, 543, 668
TauI GCSGC 2 cut(s) 437, 978
TfiI GAWTC 1 cut(s) 790
Tru1I TTAA 3 cut(s) 74, 231, 417
Tru9I TTAA 3 cut(s) 74, 231, 417
TscAI CASTG 1 cut(s) 853
TseFI GTSAC 2 cut(s) 875, 967
TseI GCWGC 2 cut(s) 425, 1082
Tsp45I GTSAC 2 cut(s) 875, 967
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 1 cut(s) 853
Vha464I CTTAAG 1 cut(s) 73
VpaK11BI GGWCC 4 cut(s) 646, 664, 889, 1095
XapI RAATTY 3 cut(s) 17, 79, 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 674
XspI CTAG 3 cut(s) 50, 549, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.