Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Reverse (-)

87817758 .. 87818291

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGAAATTTTCAGGCTTCAGCCTCTTCATTTTTACTTTCGTTGTCTTCGGAGGTAGTGCCTCTTTGGAGAGAAGTTTGGGCGCTGCTGGGGCGGTGTCGGGGGGCCAATTTTCTTTTGGTACGGGTTCGGAGGTAGGCGGCTATTACTGGGAGGAGTGGGATCCGGGTAGATGCTACAGCTTTCTCAATGGGTTGCCTCTTCTCGGCGGGGCTGCTGATGCGGGGGCGAATCGGTTAATTGGTGGTGCAGATCTGGCTCGGGATTGGGTTGAGGCTCTTCCCTATACGGAGTTCGTCGTCAGTCAGATTTGGAGTCCGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.49

Weight (kDa)

4.25

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	95, 141, 210, 224
AclWI	GGATC	2 cut(s)	158, 171
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	4
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	206
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
AlwI	GGATC	2 cut(s)	158, 171
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	86, 215
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	73, 202
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	87
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	3 cut(s)	87, 142, 216
BlsI	GCNGC	3 cut(s)	88, 143, 217
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	107, 165
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	164, 211
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	40
BpuMI	CCSGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	73, 202
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	206
BsnI	GGCC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	163, 253
BspACI	CCGC	4 cut(s)	95, 141, 210, 224
BspANI	GGCC	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	107, 165
BspPI	GGATC	2 cut(s)	158, 171
BspQI	GCTCTTC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	163, 253
Bst6I	CTCTTC	3 cut(s)	32, 207, 285
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	166, 256
BstMBI	GATC	2 cut(s)	163, 253
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 221, 257
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	73, 202
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	163, 253
BstYI	RGATCY	2 cut(s)	163, 253
BsuRI	GGCC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	123
CviJI	RGCY	8 cut(s)	18, 24, 108, 144, 183, 215, 260, 278
CviKI_1	RGCY	8 cut(s)	18, 24, 108, 144, 183, 215, 260, 278
CviQI	GTAC	1 cut(s)	123
DpnI	GATC	2 cut(s)	165, 255
DpnII	GATC	2 cut(s)	163, 253
Eam1104I	CTCTTC	3 cut(s)	32, 207, 285
EarI	CTCTTC	3 cut(s)	32, 207, 285
Eco57I	CTGAAG	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	261
FaiI	YATR	1 cut(s)	288
FauI	CCCGC	2 cut(s)	203, 217
Fnu4HI	GCNGC	3 cut(s)	87, 142, 216
Fsp4HI	GCNGC	3 cut(s)	87, 142, 216
FspBI	CTAG	1 cut(s)	325
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	87, 142, 216
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	232, 316
HpaII	CCGG	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	53, 133, 309
Hpy188III	TCNNGA	1 cut(s)	263
Hpy99I	CGWCG	1 cut(s)	302
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 221, 257
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	163, 253
LguI	GCTCTTC	1 cut(s)	285
LpnPI	CCDG	4 cut(s)	75, 136, 180, 242
Lsp1109I	GCAGC	2 cut(s)	73, 202
LweI	GCATC	2 cut(s)	164, 211
MaeI	CTAG	1 cut(s)	325
MalI	GATC	2 cut(s)	165, 255
MboI	GATC	2 cut(s)	163, 253
MboII	GAAGA	4 cut(s)	19, 40, 194, 272
MflI	RGATCY	2 cut(s)	163, 253
MluCI	AATT	3 cut(s)	8, 110, 240
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	7 cut(s)	35, 47, 73, 127, 148, 210, 268
MseI	TTAA	1 cut(s)	239
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	92, 221, 257
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	163, 253
NlaIV	GGNNCC	2 cut(s)	107, 165
NmeAIII	GCCGAG	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	88, 143, 217
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	107, 165
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	163, 253
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	3 cut(s)	87, 142, 216
Sau3AI	GATC	2 cut(s)	163, 253
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	3 cut(s)	58, 138, 185
SfaNI	GCATC	2 cut(s)	164, 211
SfcI	CTRYAG	1 cut(s)	178
Sse9I	AATT	3 cut(s)	8, 110, 240
SsiI	CCGC	4 cut(s)	95, 141, 210, 224
SspMI	CTAG	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	166
TasI	AATT	3 cut(s)	8, 110, 240
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseI	GCWGC	2 cut(s)	86, 215
TspDTI	ATGAA	1 cut(s)	19
TspGWI	ACGGA	2 cut(s)	305, 309
XapI	RAATTY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.