Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

356592 .. 357818

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015644

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGGAAATTTCAGGCTTTTGCCTCTTCATCCTCGTCTTCCTTGTCTTCGGAGGCAGTGCGTCTGTTGTGCGGCGTTTGGGCGCTGCTGGGGTTGTGTTAGTGGGCCAATTTGTTGTTGCTACGGTGGTGATGGGTGCTTGGTCGGATCGATGGTTGAAGGATAAGGGCGGTGGGAAATCGGTCTCTTCTTCTACCGGTGAGTTTAGATCTTCATCTGCGTGGGATTACGACGCTATTGGGACAGGGCTGAAGAACGTCGGATTCTGCTGTGAGGCAAGGGGATTGGGTTTTGGTGGTGATGGCCGCGTGGTGGTGTCAGCTTGTTGGGACTTCAATGGCGATGTTTTGTTCGTCGATGATGGCTGTCGCAGTTTGGCAGTCTCCTCAATTGCAGGTCGTAGAGATGCGTCTGATGGTGCTGCTTACATTATTACATTGCCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

15.53

Weight (kDa)

5.33

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	386
AccII	CGCG	1 cut(s)	309
AciI	CCGC	3 cut(s)	73, 171, 307
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	160, 337
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw26I	GTCTC	2 cut(s)	190, 388
AlwI	GGATC	1 cut(s)	156
AoxI	GGCC	2 cut(s)	106, 304
ApeKI	GCWGC	2 cut(s)	86, 422
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	142, 212, 311
BbsI	GAAGAC	2 cut(s)	31, 40
BbvI	GCAGC	2 cut(s)	73, 409
BccI	CCATC	5 cut(s)	127, 147, 296, 356, 410
BcoDI	GTCTC	2 cut(s)	190, 388
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	4 cut(s)	74, 87, 307, 423
BlsI	GCNGC	4 cut(s)	75, 88, 308, 424
BmgT120I	GGNCC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	2 cut(s)	31, 40
Bsa29I	ATCGAT	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse118I	RCCGGY	1 cut(s)	197
Bse3DI	GCAATG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	214
BseCI	ATCGAT	1 cut(s)	151
BseGI	GGATG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMI	GCAATG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	73, 409
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	108, 306
BshTI	ACCGGT	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	256, 344
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	190, 388
BsmFI	GGGAC	2 cut(s)	256, 344
BsnI	GGCC	2 cut(s)	108, 306
Bso31I	GGTCTC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	148, 209
BspACI	CCGC	3 cut(s)	73, 171, 307
BspANI	GGCC	2 cut(s)	108, 306
BspDI	ATCGAT	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	197
BssMI	GATC	2 cut(s)	148, 209
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	32, 193
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	151, 212
BstMAI	GTCTC	2 cut(s)	190, 388
BstMBI	GATC	2 cut(s)	148, 209
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	73, 409
BstV2I	GAAGAC	2 cut(s)	31, 40
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	108, 306
BsuTUI	ATCGAT	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	151
CseI	GACGC	3 cut(s)	51, 242, 399
CspAI	ACCGGT	1 cut(s)	197
CviJI	RGCY	6 cut(s)	18, 108, 250, 306, 323, 366
CviKI_1	RGCY	6 cut(s)	18, 108, 250, 306, 323, 366
DpnI	GATC	2 cut(s)	150, 211
DpnII	GATC	2 cut(s)	148, 209
EaeI	YGGCCR	1 cut(s)	304
Eam1104I	CTCTTC	2 cut(s)	32, 193
EarI	CTCTTC	2 cut(s)	32, 193
Eco31I	GGTCTC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	272
FaqI	GGGAC	2 cut(s)	256, 344
Fnu4HI	GCNGC	4 cut(s)	74, 87, 307, 423
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	74, 87, 307, 423
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	4 cut(s)	74, 87, 307, 423
GsaI	CCCAGC	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	108, 306
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	3 cut(s)	51, 242, 399
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	3 cut(s)	142, 212, 311
Hpy188I	TCNGA	4 cut(s)	53, 148, 263, 415
Hpy99I	CGWCG	3 cut(s)	236, 263, 359
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	258
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	148, 209
LpnPI	CCDG	4 cut(s)	75, 211, 231, 381
Lsp1109I	GCAGC	2 cut(s)	73, 409
LweI	GCATC	1 cut(s)	397
MaeII	ACGT	1 cut(s)	258
MalI	GATC	2 cut(s)	150, 211
MboI	GATC	2 cut(s)	148, 209
MboII	GAAGA	7 cut(s)	19, 31, 40, 180, 183, 204, 265
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	3 cut(s)	9, 110, 390
MmeI	TCCRAC	2 cut(s)	126, 241
MnlI	CCTC	5 cut(s)	35, 44, 47, 268, 397
MslI	CAYNNNNRTG	1 cut(s)	220
MspI	CCGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	309
NdeII	GATC	2 cut(s)	148, 209
PfeI	GAWTC	1 cut(s)	264
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	75, 88, 308, 424
PspFI	CCCAGC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	220
SatI	GCNGC	4 cut(s)	74, 87, 307, 423
Sau3AI	GATC	2 cut(s)	148, 209
Sau96I	GGNCC	1 cut(s)	106
SetI	ASST	3 cut(s)	261, 325, 400
SfaNI	GCATC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	220
Sse9I	AATT	3 cut(s)	9, 110, 390
SsiI	CCGC	3 cut(s)	73, 171, 307
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	151, 357
TaqII	GACCGA	1 cut(s)	172
TasI	AATT	3 cut(s)	9, 110, 390
TauI	GCSGC	2 cut(s)	76, 309
TfiI	GAWTC	1 cut(s)	264
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	86, 422
TspDTI	ATGAA	2 cut(s)	19, 204
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.