Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Reverse (-)

12261372 .. 12279441

Gene Structure 18070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCTTTGGGTAGAAGACTTGGGATTGGGAATCATACTGAAACTGAATTAGAGGCTTGCACAAGTCTATCGACTGGAACACCAAGTGCATGTAAACCAATTTGTGAGTGTGTTGATCCCGATGAAGCAAAGGAGAAGATCGAGGAGTTCTTGAAGGAAAATGGGGGTGAAGTATTCATACTTCGAAGTGTCGAAATTTGCAACTTTTTGAGCCGGGAAAAGCTTCAAAGGGCAAGTGCGTTATTGGATCGTACACTTGAGAAATCGTTCGTTAGATGTGCCAAAAGCAACGGTGATCTCGGTGGGTTGCCTCCTCCCGCAGGTGCTGCCGACGCGGTGGTGATTCATTGGGTGCAAAAGGGAGCTTTCCTCTGGCCGGATTGCATGACTCTGTCGGTGTCGGGTTCGACTTGTGGATTTATGCTTGGTGGTGTTGACGACTATTTTGTTGGTGATCGGGTTTGCTCTCTGGTGTTCATCGTGGACGGTGGAGATTGGAGAGGTTCCCAATCCGGGAGTATGAGGACGTCCAATGGGGTGGGGTGGCCGGGTTCGATCAAGTCCGGTGTGATGGCGGCGGCTATGTGTTGGGGTGTATGGCCTTATGGGTTTCTTCGATCCGTTACAAGATCGGCGCTTTCCGTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.05

Weight (kDa)

5.48

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
AatII	GACGTC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	311
AccII	CGCG	1 cut(s)	335
AciI	CCGC	4 cut(s)	318, 335, 575, 578
AclWI	GGATC	3 cut(s)	110, 255, 612
AcoI	YGGCCR	2 cut(s)	374, 545
AcsI	RAATTY	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	320, 376, 513
AgsI	TTSAA	2 cut(s)	154, 227
AluBI	AGCT	2 cut(s)	223, 365
AluI	AGCT	2 cut(s)	223, 365
AlwI	GGATC	3 cut(s)	110, 255, 612
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	3 cut(s)	374, 545, 599
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	195
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
Asp700I	GAANNNNTTC	2 cut(s)	222, 266
AspLEI	GCGC	1 cut(s)	637
AsuC2I	CCSGG	3 cut(s)	215, 514, 549
AsuHPI	GGTGA	4 cut(s)	179, 305, 352, 464
AsuII	TTCGAA	1 cut(s)	184
BarI	GAAGNNNNNNTAC	4 cut(s)	162, 165, 194, 197
BbsI	GAAGAC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	565
BcnI	CCSGG	3 cut(s)	215, 514, 549
BfaI	CTAG	1 cut(s)	649
BfoI	RGCGCY	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	3 cut(s)	327, 576, 579
BlsI	GCNGC	3 cut(s)	328, 577, 580
Bme1390I	CCNGG	3 cut(s)	215, 514, 549
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	3 cut(s)	215, 514, 549
BpiI	GAAGAC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	3 cut(s)	215, 514, 549
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	3 cut(s)	320, 376, 513
Bse1I	ACTGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	642
BseLI	CCNNNNNNNGG	3 cut(s)	320, 376, 513
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	158, 303
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	3 cut(s)	376, 547, 601
BsiSI	CCGG	5 cut(s)	214, 377, 513, 548, 564
BslI	CCNNNNNNNGG	3 cut(s)	320, 376, 513
BsnI	GGCC	3 cut(s)	376, 547, 601
Bsp119I	TTCGAA	1 cut(s)	184
Bsp143I	GATC	8 cut(s)	115, 138, 247, 295, 454, 555, 617, 629
BspACI	CCGC	4 cut(s)	318, 335, 575, 578
BspANI	GGCC	3 cut(s)	376, 547, 601
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	110, 255, 612
BspT104I	TTCGAA	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	8 cut(s)	115, 138, 247, 295, 454, 555, 617, 629
BssNI	GRCGYC	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	293, 488
BstACI	GRCGYC	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	642
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	335
BstH2I	RGCGCY	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	8 cut(s)	118, 141, 250, 298, 457, 558, 620, 632
BstMBI	GATC	8 cut(s)	115, 138, 247, 295, 454, 555, 617, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 332
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	3 cut(s)	213, 512, 547
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	376, 547, 601
BtgI	CCRYGG	1 cut(s)	642
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	637
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	2 cut(s)	90, 385
CviJI	RGCY	9 cut(s)	56, 213, 223, 365, 376, 547, 581, 601, 648
CviKI_1	RGCY	9 cut(s)	56, 213, 223, 365, 376, 547, 581, 601, 648
CviQI	GTAC	1 cut(s)	252
DpnI	GATC	8 cut(s)	117, 140, 249, 297, 456, 557, 619, 631
DpnII	GATC	8 cut(s)	115, 138, 247, 295, 454, 555, 617, 629
DraIII	CACNNNGTG	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	374, 545
EcoNI	CCTNNNNNAGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	93, 388
FaiI	YATR	9 cut(s)	36, 91, 179, 386, 422, 521, 584, 598, 606
FatI	CATG	2 cut(s)	89, 384
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	327, 576, 579
Fsp4HI	GCNGC	3 cut(s)	327, 576, 579
FspBI	CTAG	1 cut(s)	649
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	3 cut(s)	327, 576, 579
HaeII	RGCGCY	1 cut(s)	638
HaeIII	GGCC	3 cut(s)	376, 547, 601
HapII	CCGG	5 cut(s)	214, 377, 513, 548, 564
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	637
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	2 cut(s)	93, 388
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	3 cut(s)	31, 343, 388
HpaII	CCGG	5 cut(s)	214, 377, 513, 548, 564
HphI	GGTGA	4 cut(s)	179, 305, 352, 464
Hpy166II	GTNNAC	4 cut(s)	95, 254, 436, 484
Hpy188III	TCNNGA	2 cut(s)	119, 151
Hpy8I	GTNNAC	4 cut(s)	95, 254, 436, 484
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	293, 488
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	5 cut(s)	60, 89, 201, 355, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 332
HpySE526I	ACGT	1 cut(s)	527
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	93, 388
HspAI	GCGC	1 cut(s)	635
Kzo9I	GATC	8 cut(s)	115, 138, 247, 295, 454, 555, 617, 629
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	9 cut(s)	60, 227, 306, 358, 390, 455, 526, 561, 577
Lsp1109I	GCAGC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	649
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	8 cut(s)	117, 140, 249, 297, 456, 557, 619, 631
MboI	GATC	8 cut(s)	115, 138, 247, 295, 454, 555, 617, 629
MboII	GAAGA	3 cut(s)	27, 148, 605
MluCI	AATT	3 cut(s)	47, 99, 195
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	46, 136, 321, 324, 380, 494, 516
MroXI	GAANNNNTTC	2 cut(s)	222, 266
MspI	CCGG	5 cut(s)	214, 377, 513, 548, 564
MspR9I	CCNGG	3 cut(s)	215, 514, 549
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	326, 332
NciI	CCSGG	3 cut(s)	215, 514, 549
NdeII	GATC	8 cut(s)	115, 138, 247, 295, 454, 555, 617, 629
NlaIII	CATG	2 cut(s)	93, 388
NlaIV	GGNNCC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	93
NspV	TTCGAA	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	311
PdmI	GAANNNNTTC	2 cut(s)	222, 266
PfeI	GAWTC	2 cut(s)	31, 343
PflFI	GACNNNGTC	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	512
PkrI	GCNGC	3 cut(s)	328, 577, 580
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	326
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SatI	GCNGC	3 cut(s)	327, 576, 579
Sau3AI	GATC	8 cut(s)	115, 138, 247, 295, 454, 555, 617, 629
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	3 cut(s)	215, 514, 549
SetI	ASST	5 cut(s)	225, 325, 367, 505, 530
SfuI	TTCGAA	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	47, 99, 195
SsiI	CCGC	4 cut(s)	318, 335, 575, 578
SspMI	CTAG	1 cut(s)	649
StyD4I	CCNGG	3 cut(s)	213, 512, 547
TaaI	ACNGT	2 cut(s)	293, 488
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	7 cut(s)	71, 141, 184, 192, 407, 554, 616
TasI	AATT	3 cut(s)	47, 99, 195
TauI	GCSGC	2 cut(s)	578, 581
TfiI	GAWTC	2 cut(s)	31, 343
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	4 cut(s)	138, 166, 335, 466
TspGWI	ACGGA	2 cut(s)	610, 631
Tth111I	GACNNNGTC	1 cut(s)	391
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	1 cut(s)	195
XceI	RCATGY	1 cut(s)	93
XmnI	GAANNNNTTC	2 cut(s)	222, 266
XspI	CTAG	1 cut(s)	649
ZraI	GACGTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.