Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Reverse (-)

21816897 .. 21840754

Gene Structure 23858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG231400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAGAAATCTCAGGTTTCGGCCACCTCATCTTCTTCTTCGTTGTCTTCGGAGGTAGTTCTTGTGAGAAGAGTTTGGGTGCGGCTGAGCCTGTGTTGGTGGGCCAACGAACTGCTGGTACTGCATCGGTGGTTGGCGGTGATTACGGGGAGGAGTGGGATCCGGGTAGAAGCCACTGTGATATTAGTGGGTTGCCTCTTTGCGGTGGTGATTCGGTGGGTGCCAATGGGAGTTTTCTTCTGGTTGGATGGCATGACGTTGTCGGTGTCGGGTCTGACTTGTGGATCTATTGGTGTTGACGACTATTGTGATGGTGATCGGGTTTGCTCTCTGGCGTTTGTAGCGGACGGTGGAGAATGGATTGGTTCCCAATCTGGGAAGCTGCGTACTTCCAATGTTACTGCAATTGGATTCTTCTTCATCAACCTCACTGTTGAAGGGGGCATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.21

Weight (kDa)

5.74

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	4 cut(s)	82, 137, 203, 344
AclWI	GGATC	3 cut(s)	154, 167, 292
AcoI	YGGCCR	1 cut(s)	21
AfaI	GTAC	2 cut(s)	120, 388
AfiI	CCNNNNNNNGG	2 cut(s)	202, 375
AgsI	TTSAA	1 cut(s)	437
AjuI	GAANNNNNNNTTGG	1 cut(s)	429
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
AlwI	GGATC	3 cut(s)	154, 167, 292
AoxI	GGCC	2 cut(s)	21, 102
ApeKI	GCWGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	151, 220, 326
BamHI	GGATCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	2 cut(s)	242, 305
BcnI	CCSGG	1 cut(s)	164
BisI	GCNGC	2 cut(s)	83, 383
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	2 cut(s)	84, 384
Bme1390I	CCNGG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	3 cut(s)	161, 222, 367
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 375
Bse8I	GATNNNNATC	1 cut(s)	315
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	202, 375
BseMII	CTCAG	2 cut(s)	26, 77
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	369
BshFI	GGCC	2 cut(s)	23, 104
BshNI	GGYRCC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	202, 375
BsnI	GGCC	2 cut(s)	23, 104
Bsp143I	GATC	3 cut(s)	159, 284, 316
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	4 cut(s)	82, 137, 203, 344
BspANI	GGCC	2 cut(s)	23, 104
BspCNI	CTCAG	2 cut(s)	25, 78
BspLI	GGNNCC	3 cut(s)	161, 222, 367
BspPI	GGATC	3 cut(s)	154, 167, 292
BspT107I	GGYRCC	1 cut(s)	220
BssMI	GATC	3 cut(s)	159, 284, 316
Bst4CI	ACNGT	3 cut(s)	178, 350, 433
Bst6I	CTCTTC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	12, 86
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	162, 287, 319
BstMBI	GATC	3 cut(s)	159, 284, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 341
BstSCI	CCNGG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	159, 284
BstYI	RGATCY	2 cut(s)	159, 284
BsuRI	GGCC	2 cut(s)	23, 104
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	174, 429
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	119, 387
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	23, 85, 90, 104, 173, 382
CviKI_1	RGCY	6 cut(s)	23, 85, 90, 104, 173, 382
CviQI	GTAC	2 cut(s)	119, 387
DdeI	CTNAG	2 cut(s)	12, 86
DpnI	GATC	3 cut(s)	161, 286, 318
DpnII	GATC	3 cut(s)	159, 284, 316
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	256
FaiI	YATR	1 cut(s)	254
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	83, 383
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	83, 383
GluI	GCNGC	2 cut(s)	83, 383
HaeIII	GGCC	2 cut(s)	23, 104
HapII	CCGG	1 cut(s)	163
Hin1II	CATG	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	211, 411
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	3 cut(s)	151, 220, 326
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	52, 276
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	3 cut(s)	178, 350, 433
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	2 cut(s)	124, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 341
HpyF3I	CTNAG	2 cut(s)	12, 86
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	159, 284, 316
LpnPI	CCDG	6 cut(s)	101, 104, 176, 226, 317, 360
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	3 cut(s)	161, 286, 318
MboI	GATC	3 cut(s)	159, 284, 316
MboII	GAAGA	8 cut(s)	24, 27, 30, 39, 81, 229, 406, 409
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	159, 284
MluCI	AATT	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	37, 46, 144, 206, 437
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	121, 341
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	159, 284, 316
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	3 cut(s)	161, 222, 367
PfeI	GAWTC	2 cut(s)	211, 411
PflFI	GACNNNGTC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	84, 384
PspN4I	GGNNCC	3 cut(s)	161, 222, 367
PspPI	GGNCC	1 cut(s)	102
PsrI	GAACNNNNNNTAC	2 cut(s)	102, 134
PsuI	RGATCY	2 cut(s)	159, 284
PsyI	GACNNNGTC	1 cut(s)	259
RsaI	GTAC	2 cut(s)	120, 388
RsaNI	GTAC	2 cut(s)	119, 387
SatI	GCNGC	2 cut(s)	83, 383
Sau3AI	GATC	3 cut(s)	159, 284, 316
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	6 cut(s)	18, 29, 57, 260, 384, 429
SfaNI	GCATC	1 cut(s)	133
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	4 cut(s)	82, 137, 203, 344
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	178, 350, 433
TaiI	ACGT	1 cut(s)	260
TasI	AATT	1 cut(s)	405
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	2 cut(s)	211, 411
TscAI	CASTG	2 cut(s)	181, 436
TseI	GCWGC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	409
TspRI	CASTG	2 cut(s)	181, 436
Tth111I	GACNNNGTC	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.