Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

1883286 .. 1886057

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGAAAATCTCAGGCTTTTGCCTCTTCCTCTTCGTCTTCCTTGTCTTAAAAGGCAGTGCGTCTGTTGAGCGGAGTTTGGGCGCTGATGGGGCTGTGTCGGTGGGCCAAGTTGTTGTTGGTACACCATCGGAGGGATGCGGTGATTACTGGGAGGAGTGGGATCCAGGAAGCAATCTCGGCGATCTCAGGGTTTTGGGGCGAGGTCTCGCTGCAGATATGGTGGTGATGGGGGCTTGGTCGGATTGTTGGTTGACGGATAAGGACGAAGGGGATCTGGTTTCTTCTTCTGCTGGTGGCTTTGGATCTTCATATGCGCGGGACTACGACGCTAGACTGAAGGTCAGATTTTGGTGCCAGGTGAAGGGATGGGGTTCTGGTGGTGATGGCCGAGCGATGGGGTTGGTTTGTTGGGACTTCGATGGCGGTGTTCTGTTTGTCAGCTATGGCTATTGCAGTTTGGCATCCTCCATTGCAGGTCCTCGGGATGCGAACTTCGGTGTTGCTGTCCAGCTTCATCATTTGCCAAAAACCTTCAAAATCTCGCTTAGATCCAATTGTGAACATAGGAGCAAGATTGCGGAAGTGAAGTGGAAGGGCGGAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

21.8

Weight (kDa)

5.23

Isoelectric Point (pI)

22.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	354
AccBSI	CCGCTC	1 cut(s)	73
AccII	CGCG	1 cut(s)	319
AciI	CCGC	6 cut(s)	73, 141, 319, 426, 581, 600
AclWI	GGATC	5 cut(s)	158, 171, 282, 313, 546
AcoI	YGGCCR	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	134, 364, 397
AgsI	TTSAA	1 cut(s)	538
AhdI	GACNNNNNGTC	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	166, 357
AluBI	AGCT	2 cut(s)	444, 514
AluI	AGCT	2 cut(s)	444, 514
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	5 cut(s)	158, 171, 282, 313, 546
Ama87I	CYCGRG	1 cut(s)	483
AoxI	GGCC	2 cut(s)	106, 388
ApeKI	GCWGC	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	86, 319
AspS9I	GGNCC	2 cut(s)	106, 479
AsuHPI	GGTGA	4 cut(s)	155, 238, 373, 395
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	7 cut(s)	83, 136, 223, 363, 380, 391, 416
BciT130I	CCWGG	2 cut(s)	168, 359
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	467
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	168, 359
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	106, 479
BmiI	GGNNCC	2 cut(s)	165, 356
BmrFI	CCNGG	2 cut(s)	168, 359
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	128, 473, 478
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 364, 397
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	168, 359
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	4 cut(s)	143, 374, 464, 493
BseLI	CCNNNNNNNGG	3 cut(s)	134, 364, 397
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	2 cut(s)	27, 202
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	2 cut(s)	108, 390
BshNI	GGYRCC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	483
BslFI	GGGAC	2 cut(s)	335, 428
BslI	CCNNNNNNNGG	3 cut(s)	134, 364, 397
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	2 cut(s)	335, 428
BsnI	GGCC	2 cut(s)	108, 390
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	483
Bsp143I	GATC	5 cut(s)	163, 184, 274, 305, 551
BspACI	CCGC	6 cut(s)	73, 141, 319, 426, 581, 600
BspANI	GGCC	2 cut(s)	108, 390
BspCNI	CTCAG	2 cut(s)	26, 201
BspFNI	CGCG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	165, 356
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	5 cut(s)	158, 171, 282, 313, 546
BspT107I	GGYRCC	1 cut(s)	354
BspTNI	GGTCTC	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	5 cut(s)	163, 184, 274, 305, 551
Bst2UI	CCWGG	2 cut(s)	168, 359
Bst6I	CTCTTC	2 cut(s)	32, 38
BstDEI	CTNAG	3 cut(s)	13, 188, 548
BstF5I	GGATG	4 cut(s)	143, 374, 464, 493
BstFNI	CGCG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 319
BstKTI	GATC	5 cut(s)	166, 187, 277, 308, 554
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	5 cut(s)	163, 184, 274, 305, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 180
BstNI	CCWGG	2 cut(s)	168, 359
BstSCI	CCNGG	2 cut(s)	166, 357
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	4 cut(s)	163, 274, 305, 551
BstYI	RGATCY	4 cut(s)	163, 274, 305, 551
BsuRI	GGCC	2 cut(s)	108, 390
BtgZI	GCGATG	1 cut(s)	410
BtsCI	GGATG	4 cut(s)	143, 374, 464, 493
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	467
CfoI	GCGC	2 cut(s)	86, 319
Cfr13I	GGNCC	2 cut(s)	106, 479
CseI	GACGC	2 cut(s)	51, 338
Csp6I	GTAC	1 cut(s)	123
CviJI	RGCY	9 cut(s)	18, 95, 108, 236, 300, 390, 444, 450, 514
CviKI_1	RGCY	9 cut(s)	18, 95, 108, 236, 300, 390, 444, 450, 514
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	3 cut(s)	13, 188, 548
DpnI	GATC	5 cut(s)	165, 186, 276, 307, 553
DpnII	GATC	5 cut(s)	163, 184, 274, 305, 551
DriI	GACNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	32, 38
Eam1105I	GACNNNNNGTC	1 cut(s)	341
EarI	CTCTTC	2 cut(s)	32, 38
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	166, 357
FaiI	YATR	5 cut(s)	221, 313, 315, 447, 567
FaqI	GGGAC	2 cut(s)	335, 428
FauI	CCCGC	1 cut(s)	312
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	4 cut(s)	150, 381, 451, 500
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	2 cut(s)	85, 318
GluI	GCNGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	108, 390
HgaI	GACGC	2 cut(s)	51, 338
HhaI	GCGC	2 cut(s)	86, 319
Hin6I	GCGC	2 cut(s)	84, 317
HinP1I	GCGC	2 cut(s)	84, 317
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HphI	GGTGA	4 cut(s)	155, 238, 373, 395
Hpy166II	GTNNAC	3 cut(s)	125, 255, 563
Hpy188I	TCNGA	3 cut(s)	133, 244, 347
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	3 cut(s)	125, 255, 563
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	5 cut(s)	263, 334, 358, 544, 589
HpyCH4V	TGCA	3 cut(s)	215, 456, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 180
HpyF3I	CTNAG	3 cut(s)	13, 188, 548
HspAI	GCGC	2 cut(s)	84, 317
Kzo9I	GATC	5 cut(s)	163, 184, 274, 305, 551
LmnI	GCTCC	1 cut(s)	570
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	3 cut(s)	128, 473, 478
MaeI	CTAG	1 cut(s)	333
MalI	GATC	5 cut(s)	165, 186, 276, 307, 553
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	5 cut(s)	163, 184, 274, 305, 551
MboII	GAAGA	6 cut(s)	19, 25, 31, 276, 279, 300
MfeI	CAATTG	1 cut(s)	556
MflI	RGATCY	4 cut(s)	163, 274, 305, 551
MluCI	AATT	1 cut(s)	556
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	35, 41, 127, 148, 197, 478, 492
MseI	TTAA	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	168, 359
MunI	CAATTG	1 cut(s)	556
MvaI	CCWGG	2 cut(s)	168, 359
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	92, 180
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	5 cut(s)	163, 184, 274, 305, 551
NlaIV	GGNNCC	2 cut(s)	165, 356
NmeAIII	GCCGAG	2 cut(s)	159, 416
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	166, 357
PspGI	CCWGG	2 cut(s)	166, 357
PspN4I	GGNNCC	2 cut(s)	165, 356
PspPI	GGNCC	2 cut(s)	106, 479
PspPPI	RGGWCCY	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	4 cut(s)	163, 274, 305, 551
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	5 cut(s)	163, 184, 274, 305, 551
Sau96I	GGNCC	2 cut(s)	106, 479
ScrFI	CCNGG	2 cut(s)	168, 359
SetI	ASST	7 cut(s)	208, 345, 363, 446, 481, 516, 536
SfaNI	GCATC	3 cut(s)	128, 473, 478
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	479
Sse9I	AATT	1 cut(s)	556
SsiI	CCGC	6 cut(s)	73, 141, 319, 426, 581, 600
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	166, 357
TaqI	TCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	556
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	300, 506
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.