Rh5AG498800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001941
Physical Location & Seq
Forward (+)
84556267 .. 84565438
9172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG498800.1

Sequence Viewer

Length: 867 bp
ATGCATGAAGGTATTGTGATGAGAAAGTATGGTGCGGACTATCTATACTTATTGAATTATTGGTTCCTTGACAGGAGTGAGAAGAATAATGAAATTCGGTCAATGAGCCATGCCATGGTTTTGAATAATCTCCCAACCCTCAAATTGAGCTCTCACTCCACTTTCACCTCTAGCCGGAACTCCCATGGTTTAGCTCGCCTCTCTTCAAATACGTCGTCGTTTTGCTGGACCAGCCTCCCATACCAGAGCTCCATCGCCGGAACTCCTAAGCTCGCCTCTTCATCTCCACATACGTCGTCGTTTTGCTGGACCAGCCTCCCATACGGCCATACCAGAGCTCTATCGATTTTTTTGTTGGGAATTGTTGTCAATGTTGCACTGCGTCGATCTCCCCGAAGATGCTTTTGCCTCTTCATCTTCGTCTTCGGAGGCAATGTGTCTGTTGAGCGGAGTTTGGGTGCTGCTGGGGTTGTGTCGGTGGGCCAACTTACTGTTGGTACACCATCGGAGGTAGGCAGTGATTACTGGAAGGAGTGGGATCCGGGAAGCAGACCCGGTGATCTCAGGGTTTTGGGGCGAGATCTCGCTGTAGATGCGGTGGTAATTGGTACTTGGCTAGATCGATGGTTGAAGGATAAGGGCGGTGGGAACCCGGTTTCTTCTTCTGCTAGTGGGTTGGGATCTTCATCTACTTTGGAGGGGATCAGTGGTATCTCTCTACAATTTCGGGACTACGACGCTATTGGGACGGGGCTGAAGAACGTCGGATCCTGGTGCGAGGTGAGGGGATTGGGTTCTGGTGGCGATGGCCCAGAGGTGGTGTCGGCGGCGATTTGTTGGTCGGCGATGGCTATAGCAGTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

30.98

Weight (kDa)

8.75

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 448
AciI CCGC 5 cut(s) 35, 448, 596, 642, 827
AclWI GGATC 6 cut(s) 533, 546, 688, 710, 762, 775
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 776
AfaI GTAC 2 cut(s) 499, 610
AfiI CCNNNNNNNGG 3 cut(s) 115, 174, 817
AgsI TTSAA 4 cut(s) 55, 124, 207, 631
AjnI CCWGG 1 cut(s) 770
AloI GAACNNNNNNTCC 2 cut(s) 752, 784
AluBI AGCT 5 cut(s) 150, 194, 249, 271, 338
AluI AGCT 5 cut(s) 150, 194, 249, 271, 338
Alw21I GWGCWC 3 cut(s) 152, 251, 340
AlwI GGATC 6 cut(s) 533, 546, 688, 710, 762, 775
AoxI GGCC 3 cut(s) 325, 481, 808
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 1 cut(s) 93
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AspS9I GGNCC 4 cut(s) 228, 309, 481, 809
AsuC2I CCSGG 3 cut(s) 543, 555, 653
AsuHPI GGTGA 3 cut(s) 157, 569, 793
AvaII GGWCC 2 cut(s) 228, 309
BamHI GGATCC 2 cut(s) 538, 767
BanII GRGCYC 3 cut(s) 152, 251, 340
BbsI GAAGAC 1 cut(s) 415
Bbv12I GWGCWC 3 cut(s) 152, 251, 340
BbvI GCAGC 1 cut(s) 448
BccI CCATC 5 cut(s) 260, 511, 618, 800, 841
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 772
BcnI CCSGG 3 cut(s) 543, 555, 653
BfaI CTAG 3 cut(s) 171, 617, 669
BfmI CTRYAG 2 cut(s) 588, 852
BglII AGATCT 1 cut(s) 580
BisI GCNGC 2 cut(s) 462, 828
BlsI GCNGC 2 cut(s) 463, 829
Bme1390I CCNGG 4 cut(s) 543, 555, 653, 772
Bme18I GGWCC 2 cut(s) 228, 309
BmgT120I GGNCC 4 cut(s) 228, 309, 481, 809
BmiI GGNNCC 4 cut(s) 65, 540, 650, 769
BmrFI CCNGG 4 cut(s) 543, 555, 653, 772
BmsI GCATC 2 cut(s) 389, 583
BpiI GAAGAC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 267
BpuMI CCSGG 3 cut(s) 543, 555, 653
Bsa29I ATCGAT 2 cut(s) 344, 622
BsaBI GATNNNNATC 1 cut(s) 685
BsaJI CCNNGG 2 cut(s) 114, 184
BsaXI ACNNNNNCTCC 6 cut(s) 233, 263, 420, 442, 450, 472
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 174, 817
Bse1I ACTGG 1 cut(s) 530
Bse3DI GCAATG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 685
BseBI CCWGG 1 cut(s) 772
BseCI ATCGAT 2 cut(s) 344, 622
BseDI CCNNGG 2 cut(s) 114, 184
BseJI GATNNNNATC 1 cut(s) 685
BseLI CCNNNNNNNGG 3 cut(s) 115, 174, 817
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 577
BseNI ACTGG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 448
BseYI CCCAGC 1 cut(s) 464
BshFI GGCC 3 cut(s) 327, 483, 810
BshVI ATCGAT 2 cut(s) 344, 622
BsiHKAI GWGCWC 3 cut(s) 152, 251, 340
BsiSI CCGG 5 cut(s) 175, 258, 542, 555, 653
BslFI GGGAC 2 cut(s) 743, 760
BslI CCNNNNNNNGG 3 cut(s) 115, 174, 817
BsmFI GGGAC 2 cut(s) 743, 760
BsnI GGCC 3 cut(s) 327, 483, 810
Bsp1286I GDGCHC 3 cut(s) 152, 251, 340
Bsp143I GATC 8 cut(s) 386, 538, 559, 580, 619, 680, 702, 767
Bsp19I CCATGG 2 cut(s) 114, 184
BspACI CCGC 5 cut(s) 35, 448, 596, 642, 827
BspANI GGCC 3 cut(s) 327, 483, 810
BspCNI CTCAG 1 cut(s) 576
BspDI ATCGAT 2 cut(s) 344, 622
BspLI GGNNCC 4 cut(s) 65, 540, 650, 769
BspPI GGATC 6 cut(s) 533, 546, 688, 710, 762, 775
BsrBI CCGCTC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 2 cut(s) 114, 184
BssMI GATC 8 cut(s) 386, 538, 559, 580, 619, 680, 702, 767
BssT1I CCWWGG 2 cut(s) 114, 184
Bst2UI CCWGG 1 cut(s) 772
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 3 cut(s) 208, 283, 416
BstC8I GCNNGC 2 cut(s) 196, 273
BstDEI CTNAG 2 cut(s) 267, 563
BstDSI CCRYGG 2 cut(s) 114, 184
BstKTI GATC 8 cut(s) 389, 541, 562, 583, 622, 683, 705, 770
BstMBI GATC 8 cut(s) 386, 538, 559, 580, 619, 680, 702, 767
BstMWI GCNNNNNNNGC 3 cut(s) 231, 312, 593
BstNI CCWGG 1 cut(s) 772
BstSCI CCNGG 4 cut(s) 541, 553, 651, 770
BstSFI CTRYAG 2 cut(s) 588, 852
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 4 cut(s) 538, 580, 680, 767
BstYI RGATCY 4 cut(s) 538, 580, 680, 767
Bsu15I ATCGAT 2 cut(s) 344, 622
BsuRI GGCC 3 cut(s) 327, 483, 810
BsuTUI ATCGAT 2 cut(s) 344, 622
BtgI CCRYGG 2 cut(s) 114, 184
BtgZI GCGATG 3 cut(s) 238, 819, 860
BtsI GCAGTG 2 cut(s) 377, 523
BtsIMutI CAGTG 3 cut(s) 377, 523, 712
Cac8I GCNNGC 2 cut(s) 196, 273
Cfr13I GGNCC 4 cut(s) 228, 309, 481, 809
ClaI ATCGAT 2 cut(s) 344, 622
CseI GACGC 2 cut(s) 371, 746
Csp6I GTAC 2 cut(s) 498, 609
CviAII CATG 4 cut(s) 5, 110, 115, 185
CviQI GTAC 2 cut(s) 498, 609
DdeI CTNAG 2 cut(s) 267, 563
DpnI GATC 8 cut(s) 388, 540, 561, 582, 621, 682, 704, 769
DpnII GATC 8 cut(s) 386, 538, 559, 580, 619, 680, 702, 767
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 208, 283, 416
EarI CTCTTC 3 cut(s) 208, 283, 416
Ecl136II GAGCTC 3 cut(s) 150, 249, 338
Eco130I CCWWGG 2 cut(s) 114, 184
Eco24I GRGCYC 3 cut(s) 152, 251, 340
Eco47I GGWCC 2 cut(s) 228, 309
Eco53kI GAGCTC 3 cut(s) 150, 249, 338
Eco57I CTGAAG 1 cut(s) 776
EcoICRI GAGCTC 3 cut(s) 150, 249, 338
EcoRII CCWGG 1 cut(s) 770
EcoT14I CCWWGG 2 cut(s) 114, 184
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 3 cut(s) 152, 251, 340
ErhI CCWWGG 2 cut(s) 114, 184
FaeI CATG 4 cut(s) 8, 113, 118, 188
FaqI GGGAC 2 cut(s) 743, 760
FatI CATG 4 cut(s) 4, 109, 114, 184
Fnu4HI GCNGC 2 cut(s) 462, 828
FriOI GRGCYC 3 cut(s) 152, 251, 340
Fsp4HI GCNGC 2 cut(s) 462, 828
FspBI CTAG 3 cut(s) 171, 617, 669
GluI GCNGC 2 cut(s) 462, 828
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 3 cut(s) 327, 483, 810
HapII CCGG 5 cut(s) 175, 258, 542, 555, 653
HgaI GACGC 2 cut(s) 371, 746
Hin1II CATG 4 cut(s) 8, 113, 118, 188
HpaII CCGG 5 cut(s) 175, 258, 542, 555, 653
HphI GGTGA 3 cut(s) 157, 569, 793
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 3 cut(s) 428, 508, 767
Hpy188III TCNNGA 1 cut(s) 728
Hpy8I GTNNAC 1 cut(s) 500
Hpy99I CGWCG 7 cut(s) 217, 220, 298, 301, 387, 740, 767
HpyAV CCTTC 2 cut(s) 523, 625
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 3 cut(s) 212, 293, 762
HpyCH4V TGCA 2 cut(s) 4, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 312, 593
HpyF3I CTNAG 2 cut(s) 267, 563
HpySE526I ACGT 3 cut(s) 212, 293, 762
Hsp92II CATG 4 cut(s) 8, 113, 118, 188
Kzo9I GATC 8 cut(s) 386, 538, 559, 580, 619, 680, 702, 767
LmnI GCTCC 1 cut(s) 254
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 2 cut(s) 389, 583
MaeI CTAG 3 cut(s) 171, 617, 669
MaeII ACGT 3 cut(s) 212, 293, 762
MalI GATC 8 cut(s) 388, 540, 561, 582, 621, 682, 704, 769
MbiI CCGCTC 1 cut(s) 448
MboI GATC 8 cut(s) 386, 538, 559, 580, 619, 680, 702, 767
MflI RGATCY 4 cut(s) 538, 580, 680, 767
MhlI GDGCHC 3 cut(s) 152, 251, 340
MluCI AATT 6 cut(s) 55, 93, 143, 360, 603, 722
MmeI TCCRAC 1 cut(s) 745
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 5 cut(s) 175, 258, 542, 555, 653
MspR9I CCNGG 4 cut(s) 543, 555, 653, 772
MvaI CCWGG 1 cut(s) 772
MwoI GCNNNNNNNGC 3 cut(s) 231, 312, 593
NciI CCSGG 3 cut(s) 543, 555, 653
NcoI CCATGG 2 cut(s) 114, 184
NdeII GATC 8 cut(s) 386, 538, 559, 580, 619, 680, 702, 767
NlaIII CATG 4 cut(s) 8, 113, 118, 188
NlaIV GGNNCC 4 cut(s) 65, 540, 650, 769
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PflMI CCANNNNNTGG 1 cut(s) 115
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 2 cut(s) 463, 829
Psp124BI GAGCTC 3 cut(s) 152, 251, 340
Psp6I CCWGG 1 cut(s) 770
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 770
PspN4I GGNNCC 4 cut(s) 65, 540, 650, 769
PspPI GGNCC 4 cut(s) 228, 309, 481, 809
PsuI RGATCY 4 cut(s) 538, 580, 680, 767
RsaI GTAC 2 cut(s) 499, 610
RsaNI GTAC 2 cut(s) 498, 609
SacI GAGCTC 3 cut(s) 152, 251, 340
SatI GCNGC 2 cut(s) 462, 828
Sau3AI GATC 8 cut(s) 386, 538, 559, 580, 619, 680, 702, 767
Sau96I GGNCC 4 cut(s) 228, 309, 481, 809
ScrFI CCNGG 4 cut(s) 543, 555, 653, 772
SduI GDGCHC 3 cut(s) 152, 251, 340
SfaNI GCATC 2 cut(s) 389, 583
SfcI CTRYAG 2 cut(s) 588, 852
SinI GGWCC 2 cut(s) 228, 309
Sse9I AATT 6 cut(s) 55, 93, 143, 360, 603, 722
SsiI CCGC 5 cut(s) 35, 448, 596, 642, 827
SspMI CTAG 3 cut(s) 171, 617, 669
SstI GAGCTC 3 cut(s) 152, 251, 340
StyD4I CCNGG 4 cut(s) 541, 553, 651, 770
StyI CCWWGG 2 cut(s) 114, 184
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 3 cut(s) 215, 296, 765
TaqI TCGA 3 cut(s) 344, 385, 622
TaqII GACCGA 1 cut(s) 87
TasI AATT 6 cut(s) 55, 93, 143, 360, 603, 722
TauI GCSGC 1 cut(s) 830
TscAI CASTG 3 cut(s) 384, 523, 712
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 5 cut(s) 21, 105, 270, 403, 675
TspRI CASTG 3 cut(s) 384, 523, 712
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 228, 309
XapI RAATTY 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XspI CTAG 3 cut(s) 171, 617, 669
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.