RLG00000004509

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001941
Physical Location & Seq
Reverse (-)
59936235 .. 59936720
486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004509

Sequence Viewer

Length: 339 bp
ATGGATGGGAGAAAATGTGATGGTGGTGGTCTTGGCTTTTGCCTCTTCATCTTCGTCTTCCTTGCCTTCGGAGGCAGTGCGTCTGTTGAGCAGAGTTTGGCCGCTGATGGGGCTGTGTCGGTGGGCCAAGTTGCTGTTGGTACACCATCGGAGGGATGCGGTGATTACTGGGAGGAGTGGGATCCGAGAAGCAGTCTCGACGATCTCAGGGTTTTGGGGCGAGTTATCGCTGCAGATACGGTGGTGATGGGGGCTTGGTCGGATCGTTGGTTGACGGATAAGGCCGGAGGGGATCTGGTTTCTTCTTCTGTTGGTGGCTTTGGATCTTCATCTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

11.47

Weight (kDa)

4.12

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 102, 159
AclWI GGATC 5 cut(s) 176, 189, 270, 300, 331
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 108, 152
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 5 cut(s) 176, 189, 270, 300, 331
AoxI GGCC 3 cut(s) 99, 124, 282
ApeKI GCWGC 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 173, 256
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BamHI GGATCC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 217
BccI CCATC 4 cut(s) 14, 101, 154, 241
BcoDI GTCTC 1 cut(s) 200
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 2 cut(s) 102, 231
BlsI GCNGC 2 cut(s) 103, 232
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 146
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 49
BsaBI GATNNNNATC 1 cut(s) 328
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 152
Bse1I ACTGG 1 cut(s) 173
Bse8I GATNNNNATC 1 cut(s) 328
BseGI GGATG 2 cut(s) 10, 161
BseJI GATNNNNATC 1 cut(s) 328
BseLI CCNNNNNNNGG 2 cut(s) 108, 152
BseMII CTCAG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 3 cut(s) 101, 126, 284
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 108, 152
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 3 cut(s) 101, 126, 284
Bsp143I GATC 5 cut(s) 181, 202, 262, 292, 323
BspACI CCGC 2 cut(s) 102, 159
BspANI GGCC 3 cut(s) 101, 126, 284
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 183
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 5 cut(s) 176, 189, 270, 300, 331
BsrI ACTGG 1 cut(s) 173
BssMI GATC 5 cut(s) 181, 202, 262, 292, 323
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 2 cut(s) 10, 161
BstKTI GATC 5 cut(s) 184, 205, 265, 295, 326
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 5 cut(s) 181, 202, 262, 292, 323
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 3 cut(s) 181, 292, 323
BstYI RGATCY 3 cut(s) 181, 292, 323
BsuRI GGCC 3 cut(s) 101, 126, 284
BtsCI GGATG 2 cut(s) 10, 161
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 7 cut(s) 36, 101, 113, 126, 254, 284, 318
CviKI_1 RGCY 7 cut(s) 36, 101, 113, 126, 254, 284, 318
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 206
DpnI GATC 5 cut(s) 183, 204, 264, 294, 325
DpnII GATC 5 cut(s) 181, 202, 262, 292, 323
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 102, 231
FokI GGATG 2 cut(s) 17, 168
Fsp4HI GCNGC 2 cut(s) 102, 231
GluI GCNGC 2 cut(s) 102, 231
HaeIII GGCC 3 cut(s) 101, 126, 284
HapII CCGG 1 cut(s) 285
HgaI GACGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HpaII CCGG 1 cut(s) 285
HphI GGTGA 2 cut(s) 173, 256
Hpy166II GTNNAC 2 cut(s) 143, 273
Hpy188I TCNGA 4 cut(s) 71, 151, 186, 262
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 2 cut(s) 143, 273
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 206
Kzo9I GATC 5 cut(s) 181, 202, 262, 292, 323
LpnPI CCDG 4 cut(s) 154, 193, 281, 298
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 146
MalI GATC 5 cut(s) 183, 204, 264, 294, 325
MboI GATC 5 cut(s) 181, 202, 262, 292, 323
MboII GAAGA 6 cut(s) 37, 43, 49, 294, 297, 318
MflI RGATCY 3 cut(s) 181, 292, 323
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 5 cut(s) 53, 65, 145, 166, 281
MslI CAYNNNNRTG 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 5 cut(s) 181, 202, 262, 292, 323
NlaIV GGNNCC 1 cut(s) 183
PkrI GCNGC 2 cut(s) 103, 232
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 235
PsuI RGATCY 3 cut(s) 181, 292, 323
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 334
SatI GCNGC 2 cut(s) 102, 231
Sau3AI GATC 5 cut(s) 181, 202, 262, 292, 323
Sau96I GGNCC 1 cut(s) 124
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 334
SsiI CCGC 2 cut(s) 102, 159
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 198
TauI GCSGC 1 cut(s) 104
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 37, 318
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.