RLG00000014111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001941
Physical Location & Seq
Forward (+)
47422848 .. 47424789
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014111

Sequence Viewer

Length: 501 bp
ATGAGAAGCCACGGTGATCTCAGTGGGTTGCCTCCTTCCGGCGGTGCTGCTGAAGTGATGGTGATTCGGCGGGTGCAAAAGGGAGTTTTCTTTTGGTTGGATGGCATGATGTTGTTGGTGTCGGGTCCGATTTGTAGATCTATTGGTGTTGACGACTGTTGTGATGGTGATCGGGTTTGCTCTCTGGCGTTTGTCGCAGACGGTGGAGAATGGATTGGTTCCCAATCTGGGAAGCTGCGGCCTTCTGGTGGTGTGGGGTGGCTGGGTTCGATCAAATCTGGTGTGATGGAGGCAGCCGTTACAAGATCGGCGCTCTCCGTGGGTTGGTGGTGGCTTCGAGTCCTCAATCTGGAGAGGATGAACGTCGCAACTGCTGATGGAGACTGTTCGGATCCTGATGGCTTCGGAGACGGCGGCAACACGGTGAGGCTGAGTGACGTCGACGACTCTGCTCTCAACTTGGATATGACCCGAAACCAAATCAGAATCCGAGTCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.62

Weight (kDa)

4.9

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 441
AccI GTMKAC 1 cut(s) 441
AciI CCGC 4 cut(s) 42, 70, 238, 414
AclWI GGATC 2 cut(s) 386, 399
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 438
AfiI CCNNNNNNNGG 6 cut(s) 38, 41, 228, 248, 324, 349
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 375, 402
AlwI GGATC 2 cut(s) 386, 399
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 47, 235, 293
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 4 cut(s) 26, 73, 179, 436
AvaII GGWCC 1 cut(s) 125
BamHI GGATCC 1 cut(s) 391
BbvI GCAGC 3 cut(s) 34, 222, 305
BccI CCATC 6 cut(s) 52, 95, 158, 280, 371, 392
BceAI ACGGC 2 cut(s) 281, 427
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BcoDI GTCTC 2 cut(s) 375, 402
BfoI RGCGCY 1 cut(s) 314
BglII AGATCT 1 cut(s) 137
BisI GCNGC 5 cut(s) 48, 236, 239, 294, 415
BlsI GCNGC 5 cut(s) 49, 237, 240, 295, 416
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 3 cut(s) 126, 220, 393
BpmI CTGGAG 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 10, 318
Bsc4I CCNNNNNNNGG 6 cut(s) 38, 41, 228, 248, 324, 349
Bse8I GATNNNNATC 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 10, 318
BseGI GGATG 2 cut(s) 106, 363
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 6 cut(s) 38, 41, 228, 248, 324, 349
BseMII CTCAG 2 cut(s) 34, 422
BseXI GCAGC 3 cut(s) 34, 222, 305
BseYI CCCAGC 1 cut(s) 262
BshFI GGCC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 39
BslI CCNNNNNNNGG 6 cut(s) 38, 41, 228, 248, 324, 349
BsmAI GTCTC 2 cut(s) 375, 402
BsmBI CGTCTC 1 cut(s) 402
BsnI GGCC 1 cut(s) 241
Bsp143I GATC 6 cut(s) 16, 137, 169, 270, 305, 391
BspACI CCGC 4 cut(s) 42, 70, 238, 414
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 2 cut(s) 33, 423
BspLI GGNNCC 3 cut(s) 126, 220, 393
BspPI GGATC 2 cut(s) 386, 399
BssECI CCNNGG 2 cut(s) 10, 318
BssMI GATC 6 cut(s) 16, 137, 169, 270, 305, 391
BssNI GRCGYC 1 cut(s) 438
Bst4CI ACNGT 5 cut(s) 14, 158, 203, 386, 424
BstACI GRCGYC 1 cut(s) 438
BstDEI CTNAG 2 cut(s) 20, 431
BstDSI CCRYGG 2 cut(s) 10, 318
BstF5I GGATG 2 cut(s) 106, 363
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 6 cut(s) 19, 140, 172, 273, 308, 394
BstMAI GTCTC 2 cut(s) 375, 402
BstMBI GATC 6 cut(s) 16, 137, 169, 270, 305, 391
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 34, 222, 305
BstX2I RGATCY 2 cut(s) 137, 391
BstYI RGATCY 2 cut(s) 137, 391
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 2 cut(s) 10, 318
BtsCI GGATG 2 cut(s) 106, 363
BtsIMutI CAGTG 1 cut(s) 28
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 1 cut(s) 106
CviJI RGCY 8 cut(s) 9, 235, 241, 262, 296, 334, 402, 430
CviKI_1 RGCY 8 cut(s) 9, 235, 241, 262, 296, 334, 402, 430
DdeI CTNAG 2 cut(s) 20, 431
DpnI GATC 6 cut(s) 18, 139, 171, 272, 307, 393
DpnII GATC 6 cut(s) 16, 137, 169, 270, 305, 391
Eco47I GGWCC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 1 cut(s) 109
FaiI YATR 2 cut(s) 107, 467
FatI CATG 1 cut(s) 105
FauI CCCGC 1 cut(s) 63
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 5 cut(s) 48, 236, 239, 294, 415
FokI GGATG 2 cut(s) 113, 370
Fsp4HI GCNGC 5 cut(s) 48, 236, 239, 294, 415
GlaI GCGC 1 cut(s) 312
GluI GCNGC 5 cut(s) 48, 236, 239, 294, 415
GsaI CCCAGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 1 cut(s) 241
HapII CCGG 1 cut(s) 39
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 2 cut(s) 151, 442
HindII GTYRAC 2 cut(s) 151, 442
HinfI GANTC 5 cut(s) 64, 339, 446, 486, 492
HpaII CCGG 1 cut(s) 39
HphI GGTGA 4 cut(s) 26, 73, 179, 436
Hpy166II GTNNAC 2 cut(s) 151, 442
Hpy188I TCNGA 6 cut(s) 129, 391, 407, 485, 491, 497
Hpy188III TCNNGA 2 cut(s) 350, 395
Hpy8I GTNNAC 2 cut(s) 151, 442
Hpy99I CGWCG 3 cut(s) 368, 443, 446
HpyAV CCTTC 2 cut(s) 45, 252
HpyCH4III ACNGT 5 cut(s) 14, 158, 203, 386, 424
HpyCH4IV ACGT 2 cut(s) 363, 438
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 20, 431
HpySE526I ACGT 2 cut(s) 363, 438
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 6 cut(s) 16, 137, 169, 270, 305, 391
LpnPI CCDG 8 cut(s) 52, 170, 213, 231, 248, 264, 335, 408
Lsp1109I GCAGC 3 cut(s) 34, 222, 305
MaeII ACGT 2 cut(s) 363, 438
MaeIII GTNAC 2 cut(s) 298, 434
MalI GATC 6 cut(s) 18, 139, 171, 272, 307, 393
MboI GATC 6 cut(s) 16, 137, 169, 270, 305, 391
MflI RGATCY 2 cut(s) 137, 391
MlyI GAGTC 3 cut(s) 348, 440, 501
MmeI TCCRAC 2 cut(s) 78, 475
MnlI CCTC 5 cut(s) 42, 283, 348, 353, 420
MspI CCGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 6 cut(s) 16, 137, 169, 270, 305, 391
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 3 cut(s) 126, 220, 393
NmuCI GTSAC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 64, 486
PkrI GCNGC 5 cut(s) 49, 237, 240, 295, 416
PleI GAGTC 3 cut(s) 347, 440, 500
PpsI GAGTC 3 cut(s) 347, 440, 500
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 3 cut(s) 126, 220, 393
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 2 cut(s) 137, 391
SalI GTCGAC 1 cut(s) 440
SatI GCNGC 5 cut(s) 48, 236, 239, 294, 415
Sau3AI GATC 6 cut(s) 16, 137, 169, 270, 305, 391
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 3 cut(s) 348, 440, 501
SetI ASST 3 cut(s) 237, 366, 441
SgrDI CGTCGACG 1 cut(s) 440
SinI GGWCC 1 cut(s) 125
SsiI CCGC 4 cut(s) 42, 70, 238, 414
TaaI ACNGT 5 cut(s) 14, 158, 203, 386, 424
TaiI ACGT 2 cut(s) 366, 441
TaqI TCGA 3 cut(s) 269, 337, 441
TauI GCSGC 2 cut(s) 241, 417
TfiI GAWTC 2 cut(s) 64, 486
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 47, 235, 293
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 374
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 441
ZraI GACGTC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.