RLG00000008977

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001941
Physical Location & Seq
Forward (+)
44192617 .. 44195224
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008977

Sequence Viewer

Length: 687 bp
ATGGAGCAACCTTTAGGCTTCAGCCTATTCATCTTTGTCTTCATTGTCTTCGGAGGCAGTGCATCTTTGGAGAGGAGTTTGGGCGCTGCTGGGGCGGTGTTGGCCGGCCAAATTTCTATTGGTACGAGTTCAGAGGTAGGTGGTGATTACTGGGAGAAGTGGGATCCGGGTAGGAGCCTTGATGATCTCAGTGGGTCTCCTCTTCCCGGCAGTGCTGCTGAAGCTGTGGGGATTCGATGGGTGCAAAACGGGGATGCCCTCTGGCCGGATTGCTCAACGGTGTGGGTGTCGTACCTTACTGGTGGATCTCTCCTGGCTGGGGTTGGAGTCCGGGTTTGGGTCCTCAACGACTACGTTCTTCAATGCCAGGGTAGTGTGGCAGACGTCGGGCTATCGTTTAGCAGATTGACGGATTTGGGGAGTGTCATCGGCAGCAAGGTCGTTTGCCAGATGCTGTGGGTGCTGGGTATCGATCCGGTGGGCTCTGGGCTCAAATTGATTTGGGCTTGGGTCGGACCTGCAGTAGGTGAGTCTGGTGCTCAGAGGTTAAGGTCGAGAGGCTTCTTGTCTCATTTTTCTATTTTGTCGAGGATGGCTGCTTTAGGGATTGGTTGGTGGTTGAGGGGTGGGATCGGTGTTGGATCGATCCATGACACTGCGGTGGGACAGGTAGCAGAGCCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

23.83

Weight (kDa)

4.91

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
Acc36I ACCTGC 1 cut(s) 526
AciI CCGC 2 cut(s) 95, 659
AclWI GGATC 7 cut(s) 158, 171, 313, 467, 638, 640, 649
AcoI YGGCCR 3 cut(s) 102, 106, 263
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 4, 240
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 2 cut(s) 124, 293
AfiI CCNNNNNNNGG 5 cut(s) 206, 265, 319, 337, 524
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 2 cut(s) 312, 366
AleI CACNNNNGTG 1 cut(s) 659
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 2 cut(s) 201, 573
AlwI GGATC 7 cut(s) 158, 171, 313, 467, 638, 640, 649
AlwNI CAGNNNCTG 1 cut(s) 454
AoxI GGCC 3 cut(s) 102, 106, 263
ApeKI GCWGC 4 cut(s) 86, 215, 432, 596
ApoI RAATTY 1 cut(s) 111
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 340, 515
AsuC2I CCSGG 3 cut(s) 168, 207, 332
AsuHPI GGTGA 2 cut(s) 155, 539
AvaII GGWCC 2 cut(s) 340, 515
BamHI GGATCC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 485, 492
BbsI GAAGAC 2 cut(s) 31, 40
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 4 cut(s) 73, 202, 444, 583
BccI CCATC 2 cut(s) 231, 586
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 2 cut(s) 314, 368
BcnI CCSGG 3 cut(s) 168, 207, 332
BcoDI GTCTC 2 cut(s) 201, 573
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 526
BisI GCNGC 4 cut(s) 87, 216, 433, 597
BlsI GCNGC 4 cut(s) 88, 217, 434, 598
Bme1390I CCNGG 5 cut(s) 168, 207, 314, 332, 368
Bme18I GGWCC 2 cut(s) 340, 515
BmgT120I GGNCC 2 cut(s) 340, 515
BmiI GGNNCC 3 cut(s) 165, 176, 341
BmrFI CCNGG 5 cut(s) 168, 207, 314, 332, 368
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 3 cut(s) 71, 244, 441
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 2 cut(s) 31, 40
BpuMI CCSGG 3 cut(s) 168, 207, 332
Bsa29I ATCGAT 2 cut(s) 471, 644
BsaHI GRCGYC 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 265, 319, 337, 524
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 2 cut(s) 155, 304
BseBI CCWGG 2 cut(s) 314, 368
BseCI ATCGAT 2 cut(s) 471, 644
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 2 cut(s) 259, 597
BseLI CCNNNNNNNGG 5 cut(s) 206, 265, 319, 337, 524
BseMII CTCAG 2 cut(s) 202, 554
BseNI ACTGG 2 cut(s) 155, 304
BseRI GAGGAG 2 cut(s) 88, 189
BseXI GCAGC 4 cut(s) 73, 202, 444, 583
BseYI CCCAGC 3 cut(s) 89, 317, 463
BshFI GGCC 3 cut(s) 104, 108, 265
BshVI ATCGAT 2 cut(s) 471, 644
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 6 cut(s) 105, 167, 207, 266, 331, 476
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 5 cut(s) 206, 265, 319, 337, 524
BsmAI GTCTC 2 cut(s) 201, 573
BsmFI GGGAC 1 cut(s) 678
BsnI GGCC 3 cut(s) 104, 108, 265
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 485, 492, 541
Bsp143I GATC 7 cut(s) 163, 184, 305, 472, 630, 641, 645
BspACI CCGC 2 cut(s) 95, 659
BspANI GGCC 3 cut(s) 104, 108, 265
BspCNI CTCAG 2 cut(s) 201, 553
BspDI ATCGAT 2 cut(s) 471, 644
BspLI GGNNCC 3 cut(s) 165, 176, 341
BspMAI CTGCAG 1 cut(s) 523
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 7 cut(s) 158, 171, 313, 467, 638, 640, 649
BspTNI GGTCTC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 2 cut(s) 155, 304
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 7 cut(s) 163, 184, 305, 472, 630, 641, 645
BssNI GRCGYC 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 314, 368
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 188, 540
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 259, 597
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 7 cut(s) 166, 187, 308, 475, 633, 644, 648
BstMAI GTCTC 2 cut(s) 201, 573
BstMBI GATC 7 cut(s) 163, 184, 305, 472, 630, 641, 645
BstMWI GCNNNNNNNGC 4 cut(s) 92, 101, 221, 460
BstNI CCWGG 2 cut(s) 314, 368
BstSCI CCNGG 5 cut(s) 166, 205, 312, 330, 366
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 4 cut(s) 73, 202, 444, 583
BstV2I GAAGAC 2 cut(s) 31, 40
BstX2I RGATCY 2 cut(s) 163, 305
BstYI RGATCY 2 cut(s) 163, 305
Bsu15I ATCGAT 2 cut(s) 471, 644
BsuRI GGCC 3 cut(s) 104, 108, 265
BsuTUI ATCGAT 2 cut(s) 471, 644
BtsCI GGATG 2 cut(s) 259, 597
BtsI GCAGTG 3 cut(s) 64, 217, 654
BtsIMutI CAGTG 4 cut(s) 64, 196, 217, 654
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 454
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 340, 515
ClaI ATCGAT 2 cut(s) 471, 644
Csp6I GTAC 2 cut(s) 123, 292
CviAII CATG 1 cut(s) 650
CviQI GTAC 2 cut(s) 123, 292
DdeI CTNAG 2 cut(s) 188, 540
DpnI GATC 7 cut(s) 165, 186, 307, 474, 632, 643, 647
DpnII GATC 7 cut(s) 163, 184, 305, 472, 630, 641, 645
EaeI YGGCCR 3 cut(s) 102, 106, 263
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 485, 492
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 340, 515
Eco57I CTGAAG 2 cut(s) 4, 240
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 340
EcoRII CCWGG 2 cut(s) 312, 366
EcoT38I GRGCYC 2 cut(s) 485, 492
FaeI CATG 1 cut(s) 653
FaiI YATR 2 cut(s) 651, 685
FaqI GGGAC 1 cut(s) 678
FatI CATG 1 cut(s) 649
Fnu4HI GCNGC 4 cut(s) 87, 216, 433, 597
FokI GGATG 2 cut(s) 266, 604
FriOI GRGCYC 2 cut(s) 485, 492
FseI GGCCGGCC 1 cut(s) 108
Fsp4HI GCNGC 4 cut(s) 87, 216, 433, 597
GlaI GCGC 1 cut(s) 85
GluI GCNGC 4 cut(s) 87, 216, 433, 597
GsaI CCCAGC 3 cut(s) 93, 321, 467
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 3 cut(s) 104, 108, 265
HapII CCGG 6 cut(s) 105, 167, 207, 266, 331, 476
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 1 cut(s) 653
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 3 cut(s) 232, 327, 530
HpaII CCGG 6 cut(s) 105, 167, 207, 266, 331, 476
HphI GGTGA 2 cut(s) 155, 539
Hpy188I TCNGA 4 cut(s) 53, 133, 515, 543
Hpy188III TCNNGA 1 cut(s) 555
Hpy99I CGWCG 1 cut(s) 389
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 354, 384
HpyCH4V TGCA 3 cut(s) 62, 244, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 101, 221, 460
HpyF3I CTNAG 2 cut(s) 188, 540
HpySE526I ACGT 2 cut(s) 354, 384
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 1 cut(s) 653
HspAI GCGC 1 cut(s) 84
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 7 cut(s) 163, 184, 305, 472, 630, 641, 645
LmnI GCTCC 2 cut(s) 4, 174
Lsp1109I GCAGC 4 cut(s) 73, 202, 444, 583
LweI GCATC 3 cut(s) 71, 244, 441
MaeII ACGT 2 cut(s) 354, 384
MalI GATC 7 cut(s) 165, 186, 307, 474, 632, 643, 647
MboI GATC 7 cut(s) 163, 184, 305, 472, 630, 641, 645
MboII GAAGA 4 cut(s) 31, 40, 194, 350
MflI RGATCY 2 cut(s) 163, 305
MhlI GDGCHC 3 cut(s) 485, 492, 541
MluCI AATT 2 cut(s) 111, 494
MlyI GAGTC 2 cut(s) 336, 539
MmeI TCCRAC 3 cut(s) 304, 493, 619
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 659
MspI CCGG 6 cut(s) 105, 167, 207, 266, 331, 476
MspR9I CCNGG 5 cut(s) 168, 207, 314, 332, 368
MvaI CCWGG 2 cut(s) 314, 368
MwoI GCNNNNNNNGC 4 cut(s) 92, 101, 221, 460
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 3 cut(s) 168, 207, 332
NdeII GATC 7 cut(s) 163, 184, 305, 472, 630, 641, 645
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 653
NlaIV GGNNCC 3 cut(s) 165, 176, 341
OliI CACNNNNGTG 1 cut(s) 659
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 4 cut(s) 88, 217, 434, 598
PleI GAGTC 2 cut(s) 335, 538
PpsI GAGTC 2 cut(s) 335, 538
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 312, 366
PspFI CCCAGC 3 cut(s) 89, 317, 463
PspGI CCWGG 2 cut(s) 312, 366
PspN4I GGNNCC 3 cut(s) 165, 176, 341
PspPI GGNCC 2 cut(s) 340, 515
PspPPI RGGWCCY 1 cut(s) 340
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 454
PsuI RGATCY 2 cut(s) 163, 305
RigI GGCCGGCC 1 cut(s) 108
RsaI GTAC 2 cut(s) 124, 293
RsaNI GTAC 2 cut(s) 123, 292
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 4 cut(s) 87, 216, 433, 597
Sau3AI GATC 7 cut(s) 163, 184, 305, 472, 630, 641, 645
Sau96I GGNCC 2 cut(s) 340, 515
SchI GAGTC 2 cut(s) 336, 539
ScrFI CCNGG 5 cut(s) 168, 207, 314, 332, 368
SduI GDGCHC 3 cut(s) 485, 492, 541
SfaNI GCATC 3 cut(s) 71, 244, 441
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 340, 515
SmiMI CAYNNNNRTG 1 cut(s) 659
Sse9I AATT 2 cut(s) 111, 494
SsiI CCGC 2 cut(s) 95, 659
StyD4I CCNGG 5 cut(s) 166, 205, 312, 330, 366
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 2 cut(s) 357, 387
TaqI TCGA 5 cut(s) 235, 471, 554, 587, 644
TasI AATT 2 cut(s) 111, 494
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 4 cut(s) 64, 196, 217, 661
TseI GCWGC 4 cut(s) 86, 215, 432, 596
TspDTI ATGAA 2 cut(s) 19, 31
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 4 cut(s) 64, 196, 217, 661
VpaK11BI GGWCC 2 cut(s) 340, 515
XagI CCTNNNNNAGG 1 cut(s) 522
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
ZraI GACGTC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.