RLG00000007730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001941
Physical Location & Seq
Reverse (-)
20410349 .. 20411363
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007730

Sequence Viewer

Length: 501 bp
ATGGCAACTCTTGGCCTGCTTGTTCTCTTTTTCGCTTGTTTGGGTGGTGTTTGTTTTGGTTTCTCTTCGATTTCTGGTGCAGGGGTTTCTCCGTCGAGTGTTATAGGATTCGGTGGTGGCGGCTATTACTGGGAGGAGTGGGATCCGGGTAGATGCTACAGTTTTCTCAATGGGTGCCTCTTCCTGGCTGGGCTGCTGATGCGATCGCGATTCGGTGGGTGTGGAAAGGGTCTTCCTCTGGCCGGATTTTTGTGGTGTTGGTTACTGGTTTTGGGTCCCGACGTTCTTCGATGCCAGGGTGGTATGGTAGATGGGGGTTTATGGATTGGTAGCTTGACGGAGATTGGGTGTGTCATCGGCGGCGCGGTCGTTTGGCCAGATGCAGTGGGTGCTGGGAGACAATTTAGTAGGCTCTGGGCTCAAGTCATCTTGGACTTGGGTCAAAACTGCAATGGGTGGACAAGAGCTGCTGTTTTTGGGCCTCCACGATTTTCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.49

Weight (kDa)

7.46

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AccII CGCG 2 cut(s) 208, 365
AciI CCGC 3 cut(s) 120, 360, 365
AclWI GGATC 2 cut(s) 137, 150
AcoI YGGCCR 2 cut(s) 240, 374
AfiI CCNNNNNNNGG 2 cut(s) 184, 242
AjnI CCWGG 2 cut(s) 183, 294
AluBI AGCT 2 cut(s) 333, 467
AluI AGCT 2 cut(s) 333, 467
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 2 cut(s) 137, 150
AoxI GGCC 4 cut(s) 13, 240, 374, 479
ApeKI GCWGC 2 cut(s) 193, 467
AsiSI GCGATCGC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 275, 479
AsuC2I CCSGG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 275
BalI TGGCCA 1 cut(s) 376
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 180, 454
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 185, 296
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 391
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 4 cut(s) 121, 194, 361, 468
BlsI GCNGC 4 cut(s) 122, 195, 362, 469
Bme1390I CCNGG 3 cut(s) 147, 185, 296
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 275, 479
BmiI GGNNCC 4 cut(s) 144, 176, 276, 277
BmrFI CCNGG 3 cut(s) 147, 185, 296
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 4 cut(s) 143, 189, 281, 370
BmuI ACTGGG 1 cut(s) 139
BoxI GACNNNNGTC 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 242
Bse1I ACTGG 2 cut(s) 134, 270
Bse3DI GCAATG 1 cut(s) 457
BseBI CCWGG 2 cut(s) 185, 296
BseDI CCNNGG 1 cut(s) 295
BseLI CCNNNNNNNGG 2 cut(s) 184, 242
BseMI GCAATG 1 cut(s) 457
BseNI ACTGG 2 cut(s) 134, 270
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 180, 454
BseYI CCCAGC 2 cut(s) 188, 392
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 2 cut(s) 208, 365
Bsh1285I CGRYCG 2 cut(s) 206, 369
BshFI GGCC 4 cut(s) 15, 242, 376, 481
BshNI GGYRCC 1 cut(s) 174
BsiEI CGRYCG 2 cut(s) 206, 369
BsiSI CCGG 2 cut(s) 146, 243
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 184, 242
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 4 cut(s) 15, 242, 376, 481
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 142, 203
Bsp68I TCGCGA 1 cut(s) 208
BspACI CCGC 3 cut(s) 120, 360, 365
BspANI GGCC 4 cut(s) 15, 242, 376, 481
BspFNI CGCG 2 cut(s) 208, 365
BspLI GGNNCC 4 cut(s) 144, 176, 276, 277
BspPI GGATC 2 cut(s) 137, 150
BspT107I GGYRCC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 2 cut(s) 134, 270
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 142, 203
Bst2UI CCWGG 2 cut(s) 185, 296
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 70, 185
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 17
BstFNI CGCG 2 cut(s) 208, 365
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 2 cut(s) 145, 206
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 2 cut(s) 142, 203
BstMCI CGRYCG 2 cut(s) 206, 369
BstMWI GCNNNNNNNGC 2 cut(s) 199, 389
BstNI CCWGG 2 cut(s) 185, 296
BstPAI GACNNNNGTC 1 cut(s) 438
BstSCI CCNGG 3 cut(s) 145, 183, 294
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 2 cut(s) 208, 365
BstV1I GCAGC 2 cut(s) 180, 454
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 4 cut(s) 15, 242, 376, 481
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 390
BtuMI TCGCGA 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 275, 479
DpnI GATC 2 cut(s) 144, 205
DpnII GATC 2 cut(s) 142, 203
EaeI YGGCCR 2 cut(s) 240, 374
Eam1104I CTCTTC 2 cut(s) 70, 185
EarI CTCTTC 2 cut(s) 70, 185
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 183, 294
EcoT38I GRGCYC 1 cut(s) 421
FaiI YATR 3 cut(s) 104, 305, 322
FaqI GGGAC 1 cut(s) 261
Fnu4HI GCNGC 4 cut(s) 121, 194, 361, 468
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 4 cut(s) 121, 194, 361, 468
GlaI GCGC 1 cut(s) 364
GluI GCNGC 4 cut(s) 121, 194, 361, 468
GsaI CCCAGC 2 cut(s) 192, 396
HaeIII GGCC 4 cut(s) 15, 242, 376, 481
HapII CCGG 2 cut(s) 146, 243
HhaI GCGC 1 cut(s) 365
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HinfI GANTC 2 cut(s) 108, 210
HpaII CCGG 2 cut(s) 146, 243
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 1 cut(s) 500
Hpy188III TCNNGA 2 cut(s) 207, 278
Hpy8I GTNNAC 1 cut(s) 459
Hpy99I CGWCG 2 cut(s) 97, 284
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 80, 383, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 199, 389
HpySE526I ACGT 1 cut(s) 282
HspAI GCGC 1 cut(s) 363
KflI GGGWCCC 1 cut(s) 275
Kzo9I GATC 2 cut(s) 142, 203
Lsp1109I GCAGC 2 cut(s) 180, 454
LweI GCATC 4 cut(s) 143, 189, 281, 370
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 261
MalI GATC 2 cut(s) 144, 205
MboI GATC 2 cut(s) 142, 203
MboII GAAGA 4 cut(s) 57, 172, 224, 278
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 421
MlsI TGGCCA 1 cut(s) 376
MluCI AATT 1 cut(s) 401
MluNI TGGCCA 1 cut(s) 376
MnlI CCTC 4 cut(s) 127, 188, 246, 492
Mox20I TGGCCA 1 cut(s) 376
MscI TGGCCA 1 cut(s) 376
Msp20I TGGCCA 1 cut(s) 376
MspI CCGG 2 cut(s) 146, 243
MspR9I CCNGG 3 cut(s) 147, 185, 296
MvaI CCWGG 2 cut(s) 185, 296
MvnI CGCG 2 cut(s) 208, 365
MwoI GCNNNNNNNGC 2 cut(s) 199, 389
NciI CCSGG 1 cut(s) 147
NdeII GATC 2 cut(s) 142, 203
NlaIV GGNNCC 4 cut(s) 144, 176, 276, 277
NruI TCGCGA 1 cut(s) 208
PfeI GAWTC 2 cut(s) 108, 210
PkrI GCNGC 4 cut(s) 122, 195, 362, 469
Ple19I CGATCG 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 275
PshAI GACNNNNGTC 1 cut(s) 438
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 183, 294
PspFI CCCAGC 2 cut(s) 188, 392
PspGI CCWGG 2 cut(s) 183, 294
PspN4I GGNNCC 4 cut(s) 144, 176, 276, 277
PspPI GGNCC 2 cut(s) 275, 479
PspPPI RGGWCCY 1 cut(s) 275
PsuI RGATCY 1 cut(s) 142
PvuI CGATCG 1 cut(s) 206
RgaI GCGATCGC 1 cut(s) 206
RruI TCGCGA 1 cut(s) 208
SatI GCNGC 4 cut(s) 121, 194, 361, 468
Sau3AI GATC 2 cut(s) 142, 203
Sau96I GGNCC 2 cut(s) 275, 479
ScrFI CCNGG 3 cut(s) 147, 185, 296
SduI GDGCHC 1 cut(s) 421
SetI ASST 3 cut(s) 285, 335, 469
SfaAI GCGATCGC 1 cut(s) 206
SfaNI GCATC 4 cut(s) 143, 189, 281, 370
SfcI CTRYAG 1 cut(s) 157
SgfI GCGATCGC 1 cut(s) 206
SinI GGWCC 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
Sse9I AATT 1 cut(s) 401
SsiI CCGC 3 cut(s) 120, 360, 365
StyD4I CCNGG 3 cut(s) 145, 183, 294
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 68, 95, 289
TasI AATT 1 cut(s) 401
TauI GCSGC 2 cut(s) 123, 363
TfiI GAWTC 2 cut(s) 108, 210
TscAI CASTG 1 cut(s) 390
TseI GCWGC 2 cut(s) 193, 467
TspGWI ACGGA 2 cut(s) 81, 353
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.