Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

75856108 .. 75860361

Gene Structure 4254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG543300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGAGGGATTGCTCTCTTCATTCAAATTCTGAGGTAGGAGGTGATTACTGGGAGGAGTGGGATCCGGGAAGCAGCCCCGGTGATCTCAGGGTTTTGGGGCGAGATCTCGCTGTAGATGCGGTGGTAAATGGTGCTTGGCCGGATCGATGGTTGAAGGATAAGGGAGGTGGGAACCCGGTTTCTTCTTCTGCCAGTGGGTTGGGATCTTCATCTACTTTGGAGGGGATTGGTATTATCTCTCTACAATTCCGGGACTACGACGCTATTGGGACGGGGGCTGAAGAACATCTGATCCTGGTGCGAGGTGAGGGGATTGGGTTCTGGTGGCGATGGCCTAGAGGTGGTGTCGGCTTGTTGGGACTTCAATGGCGGCGATTTGTTGGTCGGCGATGGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.6

Weight (kDa)

5.65

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	122, 373
AclWI	GGATC	5 cut(s)	59, 72, 153, 214, 289
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	27, 157, 368
AjnI	CCWGG	1 cut(s)	297
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AlwI	GGATC	5 cut(s)	59, 72, 153, 214, 289
AoxI	GGCC	2 cut(s)	140, 335
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	28
AsuC2I	CCSGG	4 cut(s)	69, 81, 179, 254
AsuHPI	GGTGA	3 cut(s)	56, 95, 320
BamHI	GGATCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	3 cut(s)	144, 327, 387
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	4 cut(s)	69, 81, 179, 254
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	2 cut(s)	114, 398
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	2 cut(s)	76, 374
BlsI	GCNGC	2 cut(s)	77, 375
Bme1390I	CCNGG	5 cut(s)	69, 81, 179, 254, 299
BmiI	GGNNCC	2 cut(s)	66, 176
BmrFI	CCNGG	5 cut(s)	69, 81, 179, 254, 299
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	61
BpuMI	CCSGG	4 cut(s)	69, 81, 179, 254
Bsa29I	ATCGAT	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	2 cut(s)	56, 195
Bse8I	GATNNNNATC	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMII	CTCAG	2 cut(s)	24, 103
BseNI	ACTGG	2 cut(s)	56, 195
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	87
BshFI	GGCC	2 cut(s)	142, 337
BshVI	ATCGAT	1 cut(s)	148
BsiSI	CCGG	5 cut(s)	68, 81, 143, 179, 253
BslFI	GGGAC	3 cut(s)	269, 286, 375
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmFI	GGGAC	3 cut(s)	269, 286, 375
BsnI	GGCC	2 cut(s)	142, 337
Bsp143I	GATC	6 cut(s)	64, 85, 106, 145, 206, 294
BspACI	CCGC	2 cut(s)	122, 373
BspANI	GGCC	2 cut(s)	142, 337
BspCNI	CTCAG	2 cut(s)	25, 102
BspDI	ATCGAT	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	66, 176
BspPI	GGATC	5 cut(s)	59, 72, 153, 214, 289
BsrI	ACTGG	2 cut(s)	56, 195
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	6 cut(s)	64, 85, 106, 145, 206, 294
Bst2UI	CCWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	33, 89
BstKTI	GATC	6 cut(s)	67, 88, 109, 148, 209, 297
BstMBI	GATC	6 cut(s)	64, 85, 106, 145, 206, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	5 cut(s)	67, 79, 177, 252, 297
BstSFI	CTRYAG	2 cut(s)	114, 398
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	3 cut(s)	64, 106, 206
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	3 cut(s)	64, 106, 206
Bsu15I	ATCGAT	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	142, 337
BsuTUI	ATCGAT	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	148
CseI	GACGC	1 cut(s)	272
CviJI	RGCY	6 cut(s)	78, 142, 281, 337, 354, 397
CviKI_1	RGCY	6 cut(s)	78, 142, 281, 337, 354, 397
DdeI	CTNAG	2 cut(s)	33, 89
DpnI	GATC	6 cut(s)	66, 87, 108, 147, 208, 296
DpnII	GATC	6 cut(s)	64, 85, 106, 145, 206, 294
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	297
FaiI	YATR	1 cut(s)	400
FaqI	GGGAC	3 cut(s)	269, 286, 375
Fnu4HI	GCNGC	2 cut(s)	76, 374
Fsp4HI	GCNGC	2 cut(s)	76, 374
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	76, 374
HaeIII	GGCC	2 cut(s)	142, 337
HapII	CCGG	5 cut(s)	68, 81, 143, 179, 253
HgaI	GACGC	1 cut(s)	272
HpaII	CCGG	5 cut(s)	68, 81, 143, 179, 253
HphI	GGTGA	3 cut(s)	56, 95, 320
Hpy188I	TCNGA	2 cut(s)	34, 294
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	33, 89
Kzo9I	GATC	6 cut(s)	64, 85, 106, 145, 206, 294
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	339
MalI	GATC	6 cut(s)	66, 87, 108, 147, 208, 296
MboI	GATC	6 cut(s)	64, 85, 106, 145, 206, 294
MboII	GAAGA	6 cut(s)	11, 16, 177, 180, 201, 296
MflI	RGATCY	3 cut(s)	64, 106, 206
MluCI	AATT	2 cut(s)	28, 248
MnlI	CCTC	8 cut(s)	28, 35, 49, 161, 217, 299, 304, 335
MspI	CCGG	5 cut(s)	68, 81, 143, 179, 253
MspR9I	CCNGG	5 cut(s)	69, 81, 179, 254, 299
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	4 cut(s)	69, 81, 179, 254
NdeII	GATC	6 cut(s)	64, 85, 106, 145, 206, 294
NlaIV	GGNNCC	2 cut(s)	66, 176
PfoI	TCCNGGA	2 cut(s)	67, 252
PkrI	GCNGC	2 cut(s)	77, 375
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	66, 176
PsuI	RGATCY	3 cut(s)	64, 106, 206
SatI	GCNGC	2 cut(s)	76, 374
Sau3AI	GATC	6 cut(s)	64, 85, 106, 145, 206, 294
ScrFI	CCNGG	5 cut(s)	69, 81, 179, 254, 299
SetI	ASST	5 cut(s)	39, 46, 172, 310, 346
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	2 cut(s)	114, 398
Sse9I	AATT	2 cut(s)	28, 248
SsiI	CCGC	2 cut(s)	122, 373
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	5 cut(s)	67, 79, 177, 252, 297
TaqI	TCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	28, 248
TauI	GCSGC	1 cut(s)	376
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	3 cut(s)	11, 17, 201
TspRI	CASTG	1 cut(s)	202
XapI	RAATTY	1 cut(s)	28
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.