RLG00000001395

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001941
Physical Location & Seq
Reverse (-)
15009937 .. 15014035
4099 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001395

Sequence Viewer

Length: 963 bp
ATGGAGAAACCTTTAGGCTTCGACCTCTTCATCTTTGTCTTCGTTGTCTTCGGAGGCAGTGCATCTTTGGCGAGGAGTTTGGGCGATGCTAGGGTGGTGTTGGCGGGCCAAATTTATGTTGGTACGAGTTCAGAGGTAGGCGGTGATTACTGGGAGAAGTGGGATTCAGGTAGATGCCTTGGTGATCTCAGTGGGTCTCCTCTTCCCGGTGGTGCTGCTAAAGCGGTGGGGAATCGGTGGGTGAGAAACGGGGCTGTCCTCTGGCCGGATTGCACGACGGTGTGGGTGTCGTACCCCACTGGTGGATCTATCCTAGGTGGTGTTGGAGTCTGGTTTTGGATCCTCGACGTTTTTCTATGCCAGGGCAGTGTGGCAGACGATGAGCCATCGTTTAGTGGCTTGACGGATGTGGGGGGTGTCATTGGCGGCAGGGTCATATGGCCAGATGTTGTGGGACTGAGAAACGATCCAGTGGGCTCTGGGCTCAAGTTGGTTTGGACTTGGGTCGGAGCTGCAGTGGGTGGACACAAGCAGCAGTTGATGTTGATTAGCACACAAAATAGGACCCTCCCTGACCTAGCCGTCTCTCTGCTAGGGTTTGAGAAACCTCTCCTTTACGGCGGCAGTTTCTTCGATTTCTTCTATTGCTTGCCAATAGAAGCTATCTCCATTCTTTGGCTGGGTGACGATGTTCCTGTGGTGGTTTCAAGTTTTAGCGGCTATGCTCGTGTCAGACTCGATGATTTTACTTGGTGGGTCGACCGGATGCTGATTAGGTTGAGATGGAGGTCCATGTATGTGGTGCTGTCTAGATCGGGGCCGAGCGATGGTGGCAAAGATTGGGTTTTTCGATCTGATCTCTTAGAAAGTTCGCTGGCGAAGGACGGCTGGTGTGCAACGGTTGGCTTGATTGGATCTGCAGCTCTCGACGGTGGTGCAGCGGCTGGAGCTCTTATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

34.26

Weight (kDa)

4.78

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 581
AccB7I CCANNNNNTGG 1 cut(s) 675
AccI GTMKAC 1 cut(s) 759
AciI CCGC 7 cut(s) 104, 141, 224, 426, 621, 717, 941
AclWI GGATC 5 cut(s) 313, 334, 347, 461, 922
AcoI YGGCCR 2 cut(s) 263, 440
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 2 cut(s) 124, 293
AfiI CCNNNNNNNGG 5 cut(s) 206, 265, 302, 675, 827
AgsI TTSAA 1 cut(s) 708
AjnI CCWGG 1 cut(s) 360
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 4 cut(s) 512, 662, 923, 950
AluI AGCT 4 cut(s) 512, 662, 923, 950
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 2 cut(s) 201, 589
AlwI GGATC 5 cut(s) 313, 334, 347, 461, 922
AlwNI CAGNNNCTG 1 cut(s) 944
AoxI GGCC 4 cut(s) 106, 263, 440, 818
ApeKI GCWGC 5 cut(s) 215, 512, 532, 920, 938
ApoI RAATTY 1 cut(s) 111
AspA2I CCTAGG 1 cut(s) 313
AspS9I GGNCC 4 cut(s) 106, 564, 789, 818
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 4 cut(s) 155, 194, 253, 695
AvaII GGWCC 2 cut(s) 564, 789
AvrII CCTAGG 1 cut(s) 313
BalI TGGCCA 1 cut(s) 442
BamHI GGATCC 1 cut(s) 339
BanII GRGCYC 3 cut(s) 479, 486, 952
BauI CACGAG 1 cut(s) 726
BbsI GAAGAC 2 cut(s) 31, 40
Bbv12I GWGCWC 1 cut(s) 952
BbvI GCAGC 5 cut(s) 202, 499, 544, 932, 950
BccI CCATC 3 cut(s) 394, 777, 821
BceAI ACGGC 3 cut(s) 566, 634, 901
BcgI CGANNNNNNTGC 4 cut(s) 613, 647, 917, 951
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 201, 589
BfaI CTAG 5 cut(s) 90, 314, 578, 593, 810
BfmI CTRYAG 2 cut(s) 513, 918
BisI GCNGC 9 cut(s) 216, 427, 513, 533, 622, 718, 921, 939, 942
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 9 cut(s) 217, 428, 514, 534, 623, 719, 922, 940, 943
Bme1390I CCNGG 2 cut(s) 207, 362
Bme18I GGWCC 2 cut(s) 564, 789
BmgT120I GGNCC 4 cut(s) 106, 564, 789, 818
BmiI GGNNCC 3 cut(s) 341, 566, 819
BmrFI CCNGG 2 cut(s) 207, 362
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 4 cut(s) 71, 76, 164, 756
BmuI ACTGGG 1 cut(s) 160
BoxI GACNNNNGTC 1 cut(s) 503
BpiI GAAGAC 2 cut(s) 31, 40
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 178, 313, 361
BsaWI WCCGGW 1 cut(s) 762
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 265, 302, 675, 827
Bse1I ACTGG 3 cut(s) 155, 304, 470
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 3 cut(s) 178, 313, 361
BseGI GGATG 2 cut(s) 412, 771
BseLI CCNNNNNNNGG 5 cut(s) 206, 265, 302, 675, 827
BseMII CTCAG 2 cut(s) 202, 449
BseNI ACTGG 3 cut(s) 155, 304, 470
BseRI GAGGAG 2 cut(s) 88, 189
BseXI GCAGC 5 cut(s) 202, 499, 544, 932, 950
BseYI CCCAGC 1 cut(s) 679
BsgI GTGCAG 1 cut(s) 957
Bsh1285I CGRYCG 1 cut(s) 763
BshFI GGCC 4 cut(s) 108, 265, 442, 820
BsiEI CGRYCG 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 952
BsiSI CCGG 3 cut(s) 207, 266, 763
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 5 cut(s) 206, 265, 302, 675, 827
BsmAI GTCTC 2 cut(s) 201, 589
BsmBI CGTCTC 1 cut(s) 589
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 4 cut(s) 108, 265, 442, 820
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 479, 486, 952
Bsp143I GATC 8 cut(s) 184, 305, 339, 466, 812, 851, 856, 914
BspACI CCGC 7 cut(s) 104, 141, 224, 426, 621, 717, 941
BspANI GGCC 4 cut(s) 108, 265, 442, 820
BspCNI CTCAG 2 cut(s) 201, 450
BspLI GGNNCC 3 cut(s) 341, 566, 819
BspMAI CTGCAG 2 cut(s) 517, 922
BspPI GGATC 5 cut(s) 313, 334, 347, 461, 922
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 3 cut(s) 155, 304, 470
BssECI CCNNGG 3 cut(s) 178, 313, 361
BssMI GATC 8 cut(s) 184, 305, 339, 466, 812, 851, 856, 914
BssSI CACGAG 1 cut(s) 726
BssT1I CCWWGG 2 cut(s) 178, 313
Bst2BI CACGAG 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 280, 901, 932
Bst6I CTCTTC 2 cut(s) 32, 207
BstC8I GCNNGC 3 cut(s) 106, 650, 876
BstDEI CTNAG 3 cut(s) 188, 458, 862
BstF5I GGATG 2 cut(s) 412, 771
BstKTI GATC 8 cut(s) 187, 308, 342, 469, 815, 854, 859, 917
BstMAI GTCTC 2 cut(s) 201, 589
BstMBI GATC 8 cut(s) 184, 305, 339, 466, 812, 851, 856, 914
BstMCI CGRYCG 1 cut(s) 763
BstMWI GCNNNNNNNGC 4 cut(s) 68, 221, 831, 947
BstNI CCWGG 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 503
BstSCI CCNGG 2 cut(s) 205, 360
BstSFI CTRYAG 2 cut(s) 513, 918
BstV1I GCAGC 5 cut(s) 202, 499, 544, 932, 950
BstV2I GAAGAC 2 cut(s) 31, 40
BstX2I RGATCY 3 cut(s) 305, 339, 914
BstXI CCANNNNNNTGG 1 cut(s) 799
BstYI RGATCY 3 cut(s) 305, 339, 914
BsuRI GGCC 4 cut(s) 108, 265, 442, 820
BtgZI GCGATG 2 cut(s) 99, 840
BtsCI GGATG 2 cut(s) 412, 771
BtsI GCAGTG 3 cut(s) 64, 373, 522
BtsIMutI CAGTG 6 cut(s) 64, 196, 297, 373, 477, 522
Cac8I GCNNGC 3 cut(s) 106, 650, 876
CaiI CAGNNNCTG 1 cut(s) 944
Cfr13I GGNCC 4 cut(s) 106, 564, 789, 818
Csp6I GTAC 2 cut(s) 123, 292
CviAII CATG 1 cut(s) 793
CviQI GTAC 2 cut(s) 123, 292
DdeI CTNAG 3 cut(s) 188, 458, 862
DpnI GATC 8 cut(s) 186, 307, 341, 468, 814, 853, 858, 916
DpnII GATC 8 cut(s) 184, 305, 339, 466, 812, 851, 856, 914
DrdI GACNNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 2 cut(s) 263, 440
Eam1104I CTCTTC 2 cut(s) 32, 207
EarI CTCTTC 2 cut(s) 32, 207
Ecl136II GAGCTC 1 cut(s) 950
Eco130I CCWWGG 2 cut(s) 178, 313
Eco24I GRGCYC 3 cut(s) 479, 486, 952
Eco31I GGTCTC 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 564, 789
Eco53kI GAGCTC 1 cut(s) 950
EcoICRI GAGCTC 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 564
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 178, 313
EcoT38I GRGCYC 3 cut(s) 479, 486, 952
ErhI CCWWGG 2 cut(s) 178, 313
Esp3I CGTCTC 1 cut(s) 589
FaeI CATG 1 cut(s) 796
FaiI YATR 7 cut(s) 117, 358, 437, 439, 723, 794, 798
FaqI GGGAC 1 cut(s) 468
FatI CATG 1 cut(s) 792
FauI CCCGC 1 cut(s) 97
FauNDI CATATG 1 cut(s) 437
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 9 cut(s) 216, 427, 513, 533, 622, 718, 921, 939, 942
FokI GGATG 2 cut(s) 419, 778
FriOI GRGCYC 3 cut(s) 479, 486, 952
Fsp4HI GCNGC 9 cut(s) 216, 427, 513, 533, 622, 718, 921, 939, 942
FspBI CTAG 5 cut(s) 90, 314, 578, 593, 810
GluI GCNGC 9 cut(s) 216, 427, 513, 533, 622, 718, 921, 939, 942
GsaI CCCAGC 1 cut(s) 683
HaeIII GGCC 4 cut(s) 108, 265, 442, 820
HapII CCGG 3 cut(s) 207, 266, 763
Hin1II CATG 1 cut(s) 796
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 4 cut(s) 164, 232, 327, 735
HpaII CCGG 3 cut(s) 207, 266, 763
HphI GGTGA 4 cut(s) 155, 194, 253, 695
Hpy166II GTNNAC 2 cut(s) 524, 760
Hpy188I TCNGA 5 cut(s) 53, 133, 509, 734, 856
Hpy188III TCNNGA 2 cut(s) 810, 926
Hpy8I GTNNAC 2 cut(s) 524, 760
Hpy99I CGWCG 3 cut(s) 280, 350, 932
HpyAV CCTTC 1 cut(s) 874
HpyCH4III ACNGT 3 cut(s) 280, 901, 932
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 6 cut(s) 62, 273, 515, 896, 920, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 221, 831, 947
HpyF3I CTNAG 3 cut(s) 188, 458, 862
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 1 cut(s) 796
Kzo9I GATC 8 cut(s) 184, 305, 339, 466, 812, 851, 856, 914
LmnI GCTCC 2 cut(s) 509, 947
Lsp1109I GCAGC 5 cut(s) 202, 499, 544, 932, 950
LweI GCATC 4 cut(s) 71, 76, 164, 756
MaeI CTAG 5 cut(s) 90, 314, 578, 593, 810
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 683
MalI GATC 8 cut(s) 186, 307, 341, 468, 814, 853, 858, 916
MboI GATC 8 cut(s) 184, 305, 339, 466, 812, 851, 856, 914
MboII GAAGA 6 cut(s) 19, 31, 40, 194, 622, 631
MflI RGATCY 3 cut(s) 305, 339, 914
MhlI GDGCHC 3 cut(s) 479, 486, 952
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 1 cut(s) 111
MluNI TGGCCA 1 cut(s) 442
MlyI GAGTC 2 cut(s) 336, 729
MmeI TCCRAC 2 cut(s) 304, 487
Mox20I TGGCCA 1 cut(s) 442
MscI TGGCCA 1 cut(s) 442
MslI CAYNNNNRTG 2 cut(s) 278, 797
Msp20I TGGCCA 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 3 cut(s) 207, 266, 763
MspR9I CCNGG 2 cut(s) 207, 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 4 cut(s) 68, 221, 831, 947
NciI CCSGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 437
NdeII GATC 8 cut(s) 184, 305, 339, 466, 812, 851, 856, 914
NlaIII CATG 1 cut(s) 796
NlaIV GGNNCC 3 cut(s) 341, 566, 819
NmeAIII GCCGAG 1 cut(s) 846
NmuCI GTSAC 1 cut(s) 683
OliI CACNNNNGTG 1 cut(s) 278
PfeI GAWTC 2 cut(s) 164, 232
PflMI CCANNNNNTGG 1 cut(s) 675
PkrI GCNGC 9 cut(s) 217, 428, 514, 534, 623, 719, 922, 940, 943
PleI GAGTC 2 cut(s) 335, 729
PpsI GAGTC 2 cut(s) 335, 729
PpuMI RGGWCCY 1 cut(s) 564
PshAI GACNNNNGTC 1 cut(s) 503
Psp124BI GAGCTC 1 cut(s) 952
Psp5II RGGWCCY 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 341, 566, 819
PspPI GGNCC 4 cut(s) 106, 564, 789, 818
PspPPI RGGWCCY 1 cut(s) 564
PstI CTGCAG 2 cut(s) 517, 922
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 3 cut(s) 305, 339, 914
RsaI GTAC 2 cut(s) 124, 293
RsaNI GTAC 2 cut(s) 123, 292
RseI CAYNNNNRTG 2 cut(s) 278, 797
SacI GAGCTC 1 cut(s) 952
SalI GTCGAC 1 cut(s) 758
SatI GCNGC 9 cut(s) 216, 427, 513, 533, 622, 718, 921, 939, 942
Sau3AI GATC 8 cut(s) 184, 305, 339, 466, 812, 851, 856, 914
Sau96I GGNCC 4 cut(s) 106, 564, 789, 818
SchI GAGTC 2 cut(s) 336, 729
ScrFI CCNGG 2 cut(s) 207, 362
SduI GDGCHC 3 cut(s) 479, 486, 952
SfaNI GCATC 4 cut(s) 71, 76, 164, 756
SfcI CTRYAG 2 cut(s) 513, 918
SinI GGWCC 2 cut(s) 564, 789
SmiMI CAYNNNNRTG 2 cut(s) 278, 797
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 1 cut(s) 111
SsiI CCGC 7 cut(s) 104, 141, 224, 426, 621, 717, 941
SspMI CTAG 5 cut(s) 90, 314, 578, 593, 810
SstI GAGCTC 1 cut(s) 952
StyD4I CCNGG 2 cut(s) 205, 360
StyI CCWWGG 2 cut(s) 178, 313
TaaI ACNGT 3 cut(s) 280, 901, 932
TaiI ACGT 1 cut(s) 351
TaqI TCGA 7 cut(s) 21, 345, 633, 738, 759, 850, 927
TasI AATT 1 cut(s) 111
TauI GCSGC 4 cut(s) 429, 624, 720, 944
TfiI GAWTC 2 cut(s) 164, 232
TscAI CASTG 6 cut(s) 64, 196, 304, 373, 477, 522
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 5 cut(s) 215, 512, 532, 920, 938
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 6 cut(s) 64, 196, 304, 373, 477, 522
Van91I CCANNNNNTGG 1 cut(s) 675
VpaK11BI GGWCC 2 cut(s) 564, 789
XapI RAATTY 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 2 cut(s) 116, 676
XmaJI CCTAGG 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 759
XspI CTAG 5 cut(s) 90, 314, 578, 593, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.