Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

2254060 .. 2254889

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG033900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATCGTAGTCACAGCATCAATCATTGATTACGGGGTGGAGTGGGATCCGGGTAGAAGCCACGGTGATCTCAGTGGGTTGCCACCTTCCGGCGGTGCTGCTGAAGCGGTGGTGTTTCGGTGGGTGCGAAAGGGAGCTTTCTTCTGGCTGGATGGCATGACTTTGTCGGTGCTGGGTCCGACTAGTGGATCTATTGGTGTTGACGACTGTTGTGATGGCGATCGGGTTTGCTTTCTAGCGTTTGTCGCGGACGGTGGAGAATGGATTGGTTCCCAATCTGGGAGTCTGAGGACGACCGGTGGTGTGGGGTGGTTGGGTTCGATCAAGTCTGGTGTGATGGCGGCGGCCGTTACACGATCGGCGCTCTCCGTGGGTTGGTGGTGGCTTCGAGTCCTAGATCTGGAGAGGACGAACGGCGCAGCTGCTGATGGAGACAGTGCACTTAAACGGTGGCGTAGCGCAGCTTGCCGGAGTCGGGCTGGTGGGCTTGGTGGGCCTGCTGGGCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

17.58

Weight (kDa)

5.75

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AciI	CCGC	5 cut(s)	93, 107, 248, 341, 344
AclWI	GGATC	3 cut(s)	41, 54, 196
AcoI	YGGCCR	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	7 cut(s)	89, 92, 185, 279, 375, 400, 475
AgeI	ACCGGT	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	182
AluBI	AGCT	3 cut(s)	137, 422, 464
AluI	AGCT	3 cut(s)	137, 422, 464
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	426
Alw44I	GTGCAC	1 cut(s)	438
AlwI	GGATC	3 cut(s)	41, 54, 196
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	2 cut(s)	345, 494
ApaLI	GTGCAC	1 cut(s)	438
ApeKI	GCWGC	4 cut(s)	98, 419, 422, 461
AsiGI	ACCGGT	1 cut(s)	296
AspLEI	GCGC	3 cut(s)	364, 419, 461
AspS9I	GGNCC	2 cut(s)	176, 494
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	4 cut(s)	85, 409, 431, 473
BccI	CCATC	4 cut(s)	146, 209, 331, 422
BceAI	ACGGC	2 cut(s)	332, 430
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	426
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	3 cut(s)	183, 236, 395
BfoI	RGCGCY	1 cut(s)	365
BglI	GCCNNNNNGGC	1 cut(s)	502
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	6 cut(s)	99, 342, 345, 420, 423, 462
BlsI	GCNGC	6 cut(s)	100, 343, 346, 421, 424, 463
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	176, 494
BmiI	GGNNCC	3 cut(s)	48, 177, 271
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	51
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	61, 369
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	7 cut(s)	89, 92, 185, 279, 375, 400, 475
Bse118I	RCCGGY	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	61, 369
BseGI	GGATG	1 cut(s)	157
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	7 cut(s)	89, 92, 185, 279, 375, 400, 475
BseMII	CTCAG	2 cut(s)	85, 278
BseSI	GKGCMC	1 cut(s)	442
BseX3I	CGGCCG	1 cut(s)	345
BseXI	GCAGC	4 cut(s)	85, 409, 431, 473
BseYI	CCCAGC	2 cut(s)	172, 500
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	4 cut(s)	223, 297, 348, 359
BshFI	GGCC	2 cut(s)	347, 496
BshTI	ACCGGT	1 cut(s)	296
BsiEI	CGRYCG	4 cut(s)	223, 297, 348, 359
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	4 cut(s)	50, 90, 297, 469
BslI	CCNNNNNNNGG	7 cut(s)	89, 92, 185, 279, 375, 400, 475
BsmAI	GTCTC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	347, 496
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	8 cut(s)	3, 46, 67, 188, 220, 321, 356, 397
BspACI	CCGC	5 cut(s)	93, 107, 248, 341, 344
BspANI	GGCC	2 cut(s)	347, 496
BspCNI	CTCAG	2 cut(s)	84, 279
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	48, 177, 271
BspPI	GGATC	3 cut(s)	41, 54, 196
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	61, 369
BssMI	GATC	8 cut(s)	3, 46, 67, 188, 220, 321, 356, 397
Bst4CI	ACNGT	5 cut(s)	65, 209, 254, 437, 450
BstC8I	GCNNGC	2 cut(s)	466, 498
BstDEI	CTNAG	2 cut(s)	71, 287
BstDSI	CCRYGG	2 cut(s)	61, 369
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	3 cut(s)	364, 419, 461
BstKTI	GATC	8 cut(s)	6, 49, 70, 191, 223, 324, 359, 400
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	8 cut(s)	3, 46, 67, 188, 220, 321, 356, 397
BstMCI	CGRYCG	4 cut(s)	223, 297, 348, 359
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 245, 465, 493, 502
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	4 cut(s)	85, 409, 431, 473
BstX2I	RGATCY	3 cut(s)	46, 188, 397
BstYI	RGATCY	3 cut(s)	46, 188, 397
BstZI	CGGCCG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	347, 496
BtgI	CCRYGG	2 cut(s)	61, 369
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	79, 442
Cac8I	GCNNGC	2 cut(s)	466, 498
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	3 cut(s)	364, 419, 461
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	176, 494
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	71, 287
DpnI	GATC	8 cut(s)	5, 48, 69, 190, 222, 323, 358, 399
DpnII	GATC	8 cut(s)	3, 46, 67, 188, 220, 321, 356, 397
EaeI	YGGCCR	1 cut(s)	345
EagI	CGGCCG	1 cut(s)	345
EclXI	CGGCCG	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	123
FaeI	CATG	1 cut(s)	160
FaiI	YATR	1 cut(s)	158
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	6 cut(s)	99, 342, 345, 420, 423, 462
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	6 cut(s)	99, 342, 345, 420, 423, 462
FspBI	CTAG	3 cut(s)	183, 236, 395
GlaI	GCGC	3 cut(s)	363, 418, 460
GluI	GCNGC	6 cut(s)	99, 342, 345, 420, 423, 462
GsaI	CCCAGC	2 cut(s)	176, 504
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	347, 496
HapII	CCGG	4 cut(s)	50, 90, 297, 469
HhaI	GCGC	3 cut(s)	364, 419, 461
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	3 cut(s)	362, 417, 459
HinP1I	GCGC	3 cut(s)	362, 417, 459
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	3 cut(s)	283, 390, 472
HpaII	CCGG	4 cut(s)	50, 90, 297, 469
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	202, 440
Hpy188I	TCNGA	2 cut(s)	180, 288
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	2 cut(s)	202, 440
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	5 cut(s)	65, 209, 254, 437, 450
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 245, 465, 493, 502
HpyF3I	CTNAG	2 cut(s)	71, 287
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	3 cut(s)	362, 417, 459
Kzo9I	GATC	8 cut(s)	3, 46, 67, 188, 220, 321, 356, 397
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	4 cut(s)	85, 409, 431, 473
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	3 cut(s)	183, 236, 395
MaeIII	GTNAC	2 cut(s)	10, 349
MalI	GATC	8 cut(s)	5, 48, 69, 190, 222, 323, 358, 399
MboI	GATC	8 cut(s)	3, 46, 67, 188, 220, 321, 356, 397
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	3 cut(s)	46, 188, 397
MhlI	GDGCHC	1 cut(s)	442
MlyI	GAGTC	3 cut(s)	292, 399, 481
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	2 cut(s)	282, 399
MseI	TTAA	2 cut(s)	444, 511
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	4 cut(s)	50, 90, 297, 469
MspR9I	CCNGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	5 cut(s)	104, 245, 465, 493, 502
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	8 cut(s)	3, 46, 67, 188, 220, 321, 356, 397
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	3 cut(s)	48, 177, 271
NmuCI	GTSAC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	163
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	6 cut(s)	100, 343, 346, 421, 424, 463
Ple19I	CGATCG	2 cut(s)	223, 359
PleI	GAGTC	3 cut(s)	291, 398, 480
PpsI	GAGTC	3 cut(s)	291, 398, 480
PspFI	CCCAGC	2 cut(s)	172, 500
PspN4I	GGNNCC	3 cut(s)	48, 177, 271
PspPI	GGNCC	2 cut(s)	176, 494
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	3 cut(s)	46, 188, 397
PsyI	GACNNNGTC	1 cut(s)	163
PvuI	CGATCG	2 cut(s)	223, 359
PvuII	CAGCTG	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	444, 511
SatI	GCNGC	6 cut(s)	99, 342, 345, 420, 423, 462
Sau3AI	GATC	8 cut(s)	3, 46, 67, 188, 220, 321, 356, 397
Sau96I	GGNCC	2 cut(s)	176, 494
SchI	GAGTC	3 cut(s)	292, 399, 481
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	4 cut(s)	88, 139, 424, 466
SfaNI	GCATC	1 cut(s)	26
SinI	GGWCC	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	182
SsiI	CCGC	5 cut(s)	93, 107, 248, 341, 344
SspMI	CTAG	3 cut(s)	183, 236, 395
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	5 cut(s)	65, 209, 254, 437, 450
TaqI	TCGA	2 cut(s)	320, 388
TauI	GCSGC	2 cut(s)	344, 347
Tru1I	TTAA	2 cut(s)	444, 511
Tru9I	TTAA	2 cut(s)	444, 511
TscAI	CASTG	2 cut(s)	79, 442
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	98, 419, 422, 461
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	2 cut(s)	79, 442
Tth111I	GACNNNGTC	1 cut(s)	163
VneI	GTGCAC	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	176
XspI	CTAG	3 cut(s)	183, 236, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.