RLG00000025907

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001941
Physical Location & Seq
Reverse (-)
49110602 .. 49112552
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025907

Sequence Viewer

Length: 816 bp
ATGGAGGAAATTTCAGGCTTTTGCCTCTTCATCTTCAACTTCCTTGTCTTCGAAGGCAGTACGTCTGATGTGCGGAGTTTGGGCATTGCTAGGGTGGTGTTGGTGGGCCAATTTGCTGTTGGTACATCATCGGAGGGATGCGGTGATTACTGGGAGGAGAGGGATGCGGTGATTACTGGGAGGAGTGGGACCCGGGAAGCAGTGGCAGATAAGGGCGGTGGGAACCAGGTTTCTTCTTCTGCTGGTGGGTTTGGATCTTCATCTGCGTGGGATTACGAATCTACCTGTATGGGGCTGAAGAATGTCGGATTTTGGTGCGAGGCGAGGGGATTGGGTTCTGGTGGTGATGGTCGTTGTCGAAAATTGAGGATGGCGGCGGCGATGAGGTTTTGCGTGCTGCGGGGTGTGGTGACGATGGGTGGAATGAAAAGAGAAGCGGCTGCAGCAGCAAGCAGTTGGCCGAAGAAGATAGACGAGGGAGTTGTGGAGTGGGTAACGCAGCTAAAGATGGAACTCATGGAAAGCAGACTCTATCGATTCAGTGAACGTTTCTATTCTAGGGAGAGCTATGACGCAAGGCAGGTAACTACACCATTCATTCCCTGTAAGTCTTTCGAGGTTTTCGACTCTCATCACTCAAAGTGGCCGCCTCTGGAGCTGCCTCCATGTGATCCCGTCGTCTGTGATGCTCTCTTACCCGAAATTAACTTTAGATATCTAGTAGCCGGCCCCAATATCCTTCGCTGGGCTAGGGATTGTGTGGCGGAGCTTTTCGGTTTGACGTCACCCAGCCCGAACATGGATGGACAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

29.73

Weight (kDa)

5.42

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 785
Acc36I ACCTGC 1 cut(s) 571
AclI AACGTT 1 cut(s) 547
AclWI GGATC 2 cut(s) 262, 665
AcoI YGGCCR 2 cut(s) 458, 644
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 782
AfaI GTAC 2 cut(s) 61, 124
AfiI CCNNNNNNNGG 3 cut(s) 291, 745, 799
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 4 cut(s) 502, 567, 658, 769
AluI AGCT 4 cut(s) 502, 567, 658, 769
AlwI GGATC 2 cut(s) 262, 665
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 4 cut(s) 106, 458, 644, 727
ApeKI GCWGC 6 cut(s) 397, 440, 443, 446, 499, 658
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 3 cut(s) 106, 189, 728
AsuC2I CCSGG 2 cut(s) 193, 194
AsuHPI GGTGA 5 cut(s) 155, 181, 356, 421, 777
AsuII TTCGAA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 189
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 6 cut(s) 384, 427, 455, 458, 511, 645
BccI CCATC 5 cut(s) 341, 364, 409, 502, 797
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 2 cut(s) 193, 194
BfaI CTAG 4 cut(s) 90, 558, 719, 750
BfmI CTRYAG 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 571
Bme1390I CCNGG 3 cut(s) 193, 194, 227
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 3 cut(s) 106, 189, 728
BmiI GGNNCC 4 cut(s) 190, 191, 224, 730
BmrFI CCNGG 3 cut(s) 193, 194, 227
BmrI ACTGGG 2 cut(s) 160, 186
BmsI GCATC 3 cut(s) 128, 154, 676
BmuI ACTGGG 2 cut(s) 160, 186
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 674
Bpu14I TTCGAA 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 193, 194
Bsa29I ATCGAT 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 782
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 745, 799
Bse118I RCCGGY 1 cut(s) 725
Bse1I ACTGG 2 cut(s) 155, 181
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 259
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 4 cut(s) 143, 169, 375, 808
BseJI GATNNNNATC 1 cut(s) 259
BseLI CCNNNNNNNGG 3 cut(s) 291, 745, 799
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 155, 181
BseRI GAGGAG 2 cut(s) 170, 196
BseXI GCAGC 6 cut(s) 384, 427, 455, 458, 511, 645
BseYI CCCAGC 2 cut(s) 744, 788
BshFI GGCC 4 cut(s) 108, 460, 646, 729
BshVI ATCGAT 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 193, 726
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 3 cut(s) 291, 745, 799
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 4 cut(s) 108, 460, 646, 729
BsoBI CYCGRG 1 cut(s) 192
Bsp119I TTCGAA 1 cut(s) 51
Bsp143I GATC 2 cut(s) 254, 670
BspANI GGCC 4 cut(s) 108, 460, 646, 729
BspDI ATCGAT 1 cut(s) 535
BspLI GGNNCC 4 cut(s) 190, 191, 224, 730
BspMAI CTGCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 2 cut(s) 262, 665
BspT104I TTCGAA 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 725
BsrI ACTGG 2 cut(s) 155, 181
BssAI RCCGGY 1 cut(s) 725
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 254, 670
BssNI GRCGYC 1 cut(s) 782
Bst2UI CCWGG 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 395, 451, 727
BstF5I GGATG 4 cut(s) 143, 169, 375, 808
BstKTI GATC 2 cut(s) 257, 673
BstMBI GATC 2 cut(s) 254, 670
BstMWI GCNNNNNNNGC 3 cut(s) 443, 446, 655
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 3 cut(s) 191, 192, 225
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 6 cut(s) 384, 427, 455, 458, 511, 645
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
Bsu15I ATCGAT 1 cut(s) 535
BsuRI GGCC 4 cut(s) 108, 460, 646, 729
BsuTUI ATCGAT 1 cut(s) 535
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 4 cut(s) 143, 169, 375, 808
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 207, 547
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 3 cut(s) 395, 451, 727
Cfr10I RCCGGY 1 cut(s) 725
Cfr13I GGNCC 3 cut(s) 106, 189, 728
Cfr9I CCCGGG 1 cut(s) 192
ClaI ATCGAT 1 cut(s) 535
CseI GACGC 1 cut(s) 581
CsiI ACCWGGT 1 cut(s) 225
Csp6I GTAC 2 cut(s) 60, 123
CviAII CATG 3 cut(s) 517, 666, 799
CviQI GTAC 2 cut(s) 60, 123
DpnI GATC 2 cut(s) 256, 672
DpnII GATC 2 cut(s) 254, 670
EaeI YGGCCR 2 cut(s) 458, 644
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 779
Eco32I GATATC 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 225
EcoRV GATATC 1 cut(s) 716
FaeI CATG 3 cut(s) 520, 669, 802
FaiI YATR 5 cut(s) 290, 518, 570, 667, 800
FaqI GGGAC 1 cut(s) 202
FatI CATG 3 cut(s) 516, 665, 798
FauI CCCGC 1 cut(s) 393
FokI GGATG 3 cut(s) 150, 176, 382
FspBI CTAG 4 cut(s) 90, 558, 719, 750
GsaI CCCAGC 2 cut(s) 748, 792
GsuI CTGGAG 1 cut(s) 674
HaeIII GGCC 4 cut(s) 108, 460, 646, 729
HapII CCGG 2 cut(s) 193, 726
HgaI GACGC 1 cut(s) 581
Hin1I GRCGYC 1 cut(s) 782
Hin1II CATG 3 cut(s) 520, 669, 802
HinfI GANTC 4 cut(s) 278, 528, 537, 626
HpaII CCGG 2 cut(s) 193, 726
HphI GGTGA 5 cut(s) 155, 181, 356, 421, 777
Hpy166II GTNNAC 1 cut(s) 545
Hpy188I TCNGA 3 cut(s) 67, 133, 308
Hpy188III TCNNGA 1 cut(s) 653
Hpy8I GTNNAC 1 cut(s) 545
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 2 cut(s) 47, 749
HpyCH4IV ACGT 3 cut(s) 62, 547, 782
HpyCH4V TGCA 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 443, 446, 655
HpySE526I ACGT 3 cut(s) 62, 547, 782
Hsp92I GRCGYC 1 cut(s) 782
Hsp92II CATG 3 cut(s) 520, 669, 802
KflI GGGWCCC 1 cut(s) 189
KroI GCCGGC 1 cut(s) 725
KroNI GCCGGC 1 cut(s) 727
Kzo9I GATC 2 cut(s) 254, 670
LmnI GCTCC 2 cut(s) 655, 766
Lsp1109I GCAGC 6 cut(s) 384, 427, 455, 458, 511, 645
LweI GCATC 3 cut(s) 128, 154, 676
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 4 cut(s) 90, 558, 719, 750
MaeII ACGT 3 cut(s) 62, 547, 782
MaeIII GTNAC 4 cut(s) 409, 493, 583, 783
MalI GATC 2 cut(s) 256, 672
MboI GATC 2 cut(s) 254, 670
MboII GAAGA 9 cut(s) 19, 25, 40, 225, 228, 249, 310, 475, 478
MflI RGATCY 1 cut(s) 254
MluCI AATT 4 cut(s) 9, 110, 362, 702
MlyI GAGTC 2 cut(s) 522, 620
MmeI TCCRAC 1 cut(s) 286
MroNI GCCGGC 1 cut(s) 725
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 1 cut(s) 265
MspI CCGG 2 cut(s) 193, 726
MspR9I CCNGG 3 cut(s) 193, 194, 227
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 443, 446, 655
NaeI GCCGGC 1 cut(s) 727
NciI CCSGG 2 cut(s) 193, 194
NdeII GATC 2 cut(s) 254, 670
NgoMIV GCCGGC 1 cut(s) 725
NlaIII CATG 3 cut(s) 520, 669, 802
NlaIV GGNNCC 4 cut(s) 190, 191, 224, 730
NmuCI GTSAC 2 cut(s) 409, 783
NspV TTCGAA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PdiI GCCGGC 1 cut(s) 727
PfeI GAWTC 2 cut(s) 278, 537
PleI GAGTC 2 cut(s) 522, 620
PpsI GAGTC 2 cut(s) 522, 620
PpuMI RGGWCCY 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 547
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 2 cut(s) 744, 788
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 4 cut(s) 190, 191, 224, 730
PspPI GGNCC 3 cut(s) 106, 189, 728
PspPPI RGGWCCY 1 cut(s) 189
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 2 cut(s) 61, 124
RsaNI GTAC 2 cut(s) 60, 123
RseI CAYNNNNRTG 1 cut(s) 265
SaqAI TTAA 1 cut(s) 705
Sau3AI GATC 2 cut(s) 254, 670
Sau96I GGNCC 3 cut(s) 106, 189, 728
SchI GAGTC 2 cut(s) 522, 620
ScrFI CCNGG 3 cut(s) 193, 194, 227
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 3 cut(s) 128, 154, 676
SfcI CTRYAG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 51
SinI GGWCC 1 cut(s) 189
SmaI CCCGGG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 265
Sse9I AATT 4 cut(s) 9, 110, 362, 702
SspMI CTAG 4 cut(s) 90, 558, 719, 750
StyD4I CCNGG 3 cut(s) 191, 192, 225
TaiI ACGT 3 cut(s) 65, 550, 785
TaqI TCGA 5 cut(s) 51, 358, 535, 615, 624
TasI AATT 4 cut(s) 9, 110, 362, 702
TauI GCSGC 4 cut(s) 377, 380, 440, 649
TfiI GAWTC 2 cut(s) 278, 537
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 2 cut(s) 207, 547
TseFI GTSAC 2 cut(s) 409, 783
TseI GCWGC 6 cut(s) 397, 440, 443, 446, 499, 658
Tsp45I GTSAC 2 cut(s) 409, 783
TspDTI ATGAA 4 cut(s) 19, 249, 440, 586
TspMI CCCGGG 1 cut(s) 192
TspRI CASTG 2 cut(s) 207, 547
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 2 cut(s) 116, 796
XmaI CCCGGG 1 cut(s) 192
XspI CTAG 4 cut(s) 90, 558, 719, 750
ZraI GACGTC 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.