RLG00000007778

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001941
Physical Location & Seq
Forward (+)
20956874 .. 20957678
805 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007778

Sequence Viewer

Length: 531 bp
ATGAAGAAAATTTCATGCTATTGCCTCTTCATCTTTGTCTTCATTGTCTTCGGAGGTAGTGCGTTTGTTGAGTGGAGTTTGGCCGCTGTTGGGGCTGTGTCAGTGGGCCAACTTACTGTTGGTACACCATCGGAGGTAGGCGGTGATTACTGGGAGGAGTGGGATCCGGGAAGCAGCCTCGGTGATCTCAGGGTTTTGGGGCGAGGTCTCGCTGCAGATGCGGTGGTGATTGGTGCTTGGCCGGATCGATGGTTGAAGGATAAGGCCGGTGGGAACCCGGTTTCTTCTTCTGCCGGGGATTGTGGTATCTCTCTACAATTTCGGGACTACGACGCTATCGAGATGGGGTTGAAGAATGTCGGGGCTTGGTGCGAGGTGAGGGAATTGGGTTCTAGTTGCGATGGCCGAGAGGTGGTGTCGGCTTGTTGGGACTTCAATGGTGGCGATTTGTTGGTTGGCGATGGCTATAGCAATTTGGCAGTCTCCTCCATTGTAGGTCCAAGGGACGCGTCCGACGGCGCTGCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

18.4

Weight (kDa)

4.24

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 509
AciI CCGC 3 cut(s) 84, 141, 221
AclWI GGATC 3 cut(s) 158, 171, 252
AcoI YGGCCR 3 cut(s) 81, 239, 403
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 90, 412
AflIII ACRYGT 1 cut(s) 507
AgsI TTSAA 3 cut(s) 256, 352, 436
Alw26I GTCTC 2 cut(s) 212, 487
AlwI GGATC 3 cut(s) 158, 171, 252
AoxI GGCC 5 cut(s) 81, 106, 239, 264, 403
ApeKI GCWGC 3 cut(s) 174, 212, 521
ApoI RAATTY 1 cut(s) 9
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 2 cut(s) 106, 497
AsuC2I CCSGG 3 cut(s) 168, 278, 295
AsuHPI GGTGA 4 cut(s) 155, 194, 238, 388
AvaII GGWCC 1 cut(s) 497
BamHI GGATCC 1 cut(s) 163
BbsI GAAGAC 2 cut(s) 31, 40
BbvI GCAGC 3 cut(s) 186, 199, 508
BccI CCATC 5 cut(s) 136, 243, 337, 395, 455
BcgI CGANNNNNNTGC 1 cut(s) 503
BcnI CCSGG 3 cut(s) 168, 278, 295
BcoDI GTCTC 2 cut(s) 212, 487
BfaI CTAG 2 cut(s) 393, 529
BfmI CTRYAG 2 cut(s) 213, 466
BfoI RGCGCY 1 cut(s) 522
BisI GCNGC 4 cut(s) 84, 175, 213, 522
BlsI GCNGC 4 cut(s) 85, 176, 214, 523
Bme1390I CCNGG 3 cut(s) 168, 278, 295
Bme18I GGWCC 1 cut(s) 497
BmgT120I GGNCC 2 cut(s) 106, 497
BmiI GGNNCC 2 cut(s) 165, 275
BmrFI CCNGG 3 cut(s) 168, 278, 295
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 2 cut(s) 31, 40
BpuMI CCSGG 3 cut(s) 168, 278, 295
Bsa29I ATCGAT 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 3 cut(s) 178, 294, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 412
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 3 cut(s) 178, 294, 500
BseLI CCNNNNNNNGG 2 cut(s) 90, 412
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 2 cut(s) 170, 475
BseXI GCAGC 3 cut(s) 186, 199, 508
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 5 cut(s) 83, 108, 241, 266, 405
BshVI ATCGAT 1 cut(s) 247
BsiSI CCGG 5 cut(s) 167, 242, 267, 278, 294
BslFI GGGAC 3 cut(s) 338, 443, 518
BslI CCNNNNNNNGG 2 cut(s) 90, 412
BsmAI GTCTC 2 cut(s) 212, 487
BsmFI GGGAC 3 cut(s) 338, 443, 518
BsnI GGCC 5 cut(s) 83, 108, 241, 266, 405
Bso31I GGTCTC 1 cut(s) 212
Bsp143I GATC 3 cut(s) 163, 184, 244
BspACI CCGC 3 cut(s) 84, 141, 221
BspANI GGCC 5 cut(s) 83, 108, 241, 266, 405
BspCNI CTCAG 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 247
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 165, 275
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 3 cut(s) 158, 171, 252
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 178, 294, 500
BssMI GATC 3 cut(s) 163, 184, 244
BssT1I CCWWGG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 188
BstFNI CGCG 1 cut(s) 509
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 3 cut(s) 166, 187, 247
BstMAI GTCTC 2 cut(s) 212, 487
BstMBI GATC 3 cut(s) 163, 184, 244
BstMWI GCNNNNNNNGC 2 cut(s) 92, 218
BstSCI CCNGG 3 cut(s) 166, 276, 293
BstSFI CTRYAG 2 cut(s) 213, 466
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 3 cut(s) 186, 199, 508
BstV2I GAAGAC 2 cut(s) 31, 40
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 247
BsuRI GGCC 5 cut(s) 83, 108, 241, 266, 405
BsuTUI ATCGAT 1 cut(s) 247
BtgZI GCGATG 2 cut(s) 414, 474
BtsIMutI CAGTG 1 cut(s) 108
CfoI GCGC 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 106, 497
ClaI ATCGAT 1 cut(s) 247
CseI GACGC 3 cut(s) 341, 498, 515
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 15
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 1 cut(s) 188
DpnI GATC 3 cut(s) 165, 186, 246
DpnII GATC 3 cut(s) 163, 184, 244
EaeI YGGCCR 3 cut(s) 81, 239, 403
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 500
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 500
FaeI CATG 1 cut(s) 18
FaiI YATR 2 cut(s) 16, 468
FaqI GGGAC 3 cut(s) 338, 443, 518
FatI CATG 1 cut(s) 14
Fnu4HI GCNGC 4 cut(s) 84, 175, 213, 522
Fsp4HI GCNGC 4 cut(s) 84, 175, 213, 522
FspBI CTAG 2 cut(s) 393, 529
GlaI GCGC 1 cut(s) 520
GluI GCNGC 4 cut(s) 84, 175, 213, 522
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 5 cut(s) 83, 108, 241, 266, 405
HapII CCGG 5 cut(s) 167, 242, 267, 278, 294
HgaI GACGC 3 cut(s) 341, 498, 515
HhaI GCGC 1 cut(s) 521
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HpaII CCGG 5 cut(s) 167, 242, 267, 278, 294
HphI GGTGA 4 cut(s) 155, 194, 238, 388
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 3 cut(s) 53, 133, 514
Hpy188III TCNNGA 2 cut(s) 323, 340
Hpy8I GTNNAC 1 cut(s) 125
Hpy99I CGWCG 2 cut(s) 335, 518
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 218
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 1 cut(s) 519
Kzo9I GATC 3 cut(s) 163, 184, 244
LpnPI CCDG 7 cut(s) 136, 175, 180, 255, 280, 291, 307
Lsp1109I GCAGC 3 cut(s) 186, 199, 508
LweI GCATC 1 cut(s) 208
MaeI CTAG 2 cut(s) 393, 529
MalI GATC 3 cut(s) 165, 186, 246
MboI GATC 3 cut(s) 163, 184, 244
MboII GAAGA 7 cut(s) 16, 19, 31, 40, 276, 279, 364
MflI RGATCY 1 cut(s) 163
MluCI AATT 4 cut(s) 9, 317, 383, 472
MluI ACGCGT 1 cut(s) 507
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 5 cut(s) 167, 242, 267, 278, 294
MspR9I CCNGG 3 cut(s) 168, 278, 295
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 92, 218
NciI CCSGG 3 cut(s) 168, 278, 295
NdeII GATC 3 cut(s) 163, 184, 244
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 2 cut(s) 165, 275
NmeAIII GCCGAG 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 4 cut(s) 85, 176, 214, 523
PspN4I GGNNCC 2 cut(s) 165, 275
PspPI GGNCC 2 cut(s) 106, 497
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 4 cut(s) 84, 175, 213, 522
Sau3AI GATC 3 cut(s) 163, 184, 244
Sau96I GGNCC 2 cut(s) 106, 497
ScrFI CCNGG 3 cut(s) 168, 278, 295
SetI ASST 6 cut(s) 58, 138, 208, 378, 414, 499
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 2 cut(s) 213, 466
SinI GGWCC 1 cut(s) 497
Sse9I AATT 4 cut(s) 9, 317, 383, 472
SsiI CCGC 3 cut(s) 84, 141, 221
SspMI CTAG 2 cut(s) 393, 529
StyD4I CCNGG 3 cut(s) 166, 276, 293
StyI CCWWGG 1 cut(s) 500
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 247, 339
TasI AATT 4 cut(s) 9, 317, 383, 472
TauI GCSGC 1 cut(s) 86
TscAI CASTG 1 cut(s) 108
TseI GCWGC 3 cut(s) 174, 212, 521
TspDTI ATGAA 3 cut(s) 17, 19, 31
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 1 cut(s) 9
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 2 cut(s) 393, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.