Rh3DG231300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001941
Physical Location & Seq
Reverse (-)
21949503 .. 21973967
24465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG231300.1

Sequence Viewer

Length: 483 bp
ATGCCTTTTTCCGGCGGTGTTGTTGAAGCGGTGGTGATTCGGTCGGTGCCAATGGGAGTTTTCTTCTGGTTGGATGGCATGACGTTGTCGGTGTCGGGTCTGACTTGTGGATCTATTGGTGTTGACGACTATTGTGATGGTGATCGGGTTTGCTCTCTGGCGTTTGTAGCGGATGGTGGAGAATGGATTGGTTCCCAATCTGGGAAGCTACAGACGTCCAATGGTATGGGGTGGCTGGGTTCGATCAAGTCTGGTGTGATGGAGGCGGCCGTTACAAGATCGACGCTCTCTGTGGGTTGGTGGTGGCTTCGAGTCCTAGATCTGGAAAGGACGAACATCGCAGCTGTTGATGGAGACGATGCACTCCGACGGAGGTGTAGCTCAGCGTGCCGGAGTCGGGCTGCTCTGCTTCCACTTCTTCCACAAGTTACTGCAATTGGATTCTTCTTCATCAACCTCACTGTTGAAGGGGGCATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

16.94

Weight (kDa)

4.82

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 46
AciI CCGC 4 cut(s) 15, 29, 170, 266
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 11, 201, 322, 397
AgsI TTSAA 2 cut(s) 26, 467
AjuI GAANNNNNNNTTGG 1 cut(s) 459
AluBI AGCT 3 cut(s) 208, 344, 381
AluI AGCT 3 cut(s) 208, 344, 381
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 341, 401
AsuHPI GGTGA 2 cut(s) 46, 152
BanI GGYRCC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 353, 388
BccI CCATC 5 cut(s) 68, 131, 167, 253, 344
BceAI ACGGC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 209
BglII AGATCT 1 cut(s) 319
BisI GCNGC 3 cut(s) 267, 342, 402
BlpI GCTNAGC 1 cut(s) 382
BlsI GCNGC 3 cut(s) 268, 343, 403
BmiI GGNNCC 2 cut(s) 48, 193
BmsI GCATC 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 215
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 201, 322, 397
Bse8I GATNNNNATC 1 cut(s) 141
BseGI GGATG 2 cut(s) 79, 178
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 4 cut(s) 11, 201, 322, 397
BseMII CTCAG 1 cut(s) 396
BseX3I CGGCCG 1 cut(s) 267
BseXI GCAGC 2 cut(s) 353, 388
BseYI CCCAGC 1 cut(s) 235
Bsh1285I CGRYCG 2 cut(s) 44, 270
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 46
BsiEI CGRYCG 2 cut(s) 44, 270
BsiSI CCGG 2 cut(s) 12, 391
BslI CCNNNNNNNGG 4 cut(s) 11, 201, 322, 397
BsmAI GTCTC 1 cut(s) 348
BsmBI CGTCTC 1 cut(s) 348
BsnI GGCC 1 cut(s) 269
Bsp143I GATC 5 cut(s) 110, 142, 243, 278, 319
Bsp1720I GCTNAGC 1 cut(s) 382
BspACI CCGC 4 cut(s) 15, 29, 170, 266
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 395
BspLI GGNNCC 2 cut(s) 48, 193
BspPI GGATC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 46
BssMI GATC 5 cut(s) 110, 142, 243, 278, 319
BssNI GRCGYC 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 463
BstACI GRCGYC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 388
BstDEI CTNAG 1 cut(s) 382
BstF5I GGATG 2 cut(s) 79, 178
BstKTI GATC 5 cut(s) 113, 145, 246, 281, 322
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 5 cut(s) 110, 142, 243, 278, 319
BstMCI CGRYCG 2 cut(s) 44, 270
BstMWI GCNNNNNNNGC 2 cut(s) 167, 387
BstSFI CTRYAG 1 cut(s) 209
BstV1I GCAGC 2 cut(s) 353, 388
BstX2I RGATCY 2 cut(s) 110, 319
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 2 cut(s) 110, 319
BstZI CGGCCG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 269
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 2 cut(s) 79, 178
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 388
CseI GACGC 1 cut(s) 292
CviAII CATG 1 cut(s) 79
CviJI RGCY 7 cut(s) 208, 235, 269, 307, 344, 381, 401
CviKI_1 RGCY 7 cut(s) 208, 235, 269, 307, 344, 381, 401
DdeI CTNAG 1 cut(s) 382
DpnI GATC 5 cut(s) 112, 144, 245, 280, 321
DpnII GATC 5 cut(s) 110, 142, 243, 278, 319
EaeI YGGCCR 1 cut(s) 267
EagI CGGCCG 1 cut(s) 267
EclXI CGGCCG 1 cut(s) 267
Eco52I CGGCCG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 227
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 3 cut(s) 267, 342, 402
FokI GGATG 2 cut(s) 86, 185
Fsp4HI GCNGC 3 cut(s) 267, 342, 402
FspBI CTAG 1 cut(s) 317
GluI GCNGC 3 cut(s) 267, 342, 402
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 269
HapII CCGG 2 cut(s) 12, 391
HgaI GACGC 1 cut(s) 292
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 1 cut(s) 82
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 4 cut(s) 37, 312, 394, 441
HpaII CCGG 2 cut(s) 12, 391
HphI GGTGA 2 cut(s) 46, 152
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 102, 368
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 2 cut(s) 286, 372
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 1 cut(s) 463
HpyCH4IV ACGT 2 cut(s) 83, 215
HpyCH4V TGCA 2 cut(s) 362, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 387
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 2 cut(s) 83, 215
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 5 cut(s) 110, 142, 243, 278, 319
LpnPI CCDG 8 cut(s) 25, 52, 143, 186, 221, 237, 308, 404
Lsp1109I GCAGC 2 cut(s) 353, 388
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 317
MaeII ACGT 2 cut(s) 83, 215
MaeIII GTNAC 2 cut(s) 271, 427
MalI GATC 5 cut(s) 112, 144, 245, 280, 321
MboI GATC 5 cut(s) 110, 142, 243, 278, 319
MboII GAAGA 4 cut(s) 55, 410, 436, 439
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 2 cut(s) 110, 319
MluCI AATT 1 cut(s) 435
MlyI GAGTC 2 cut(s) 321, 403
MmeI TCCRAC 2 cut(s) 51, 391
MnlI CCTC 3 cut(s) 256, 366, 467
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 2 cut(s) 12, 391
MunI CAATTG 1 cut(s) 435
MwoI GCNNNNNNNGC 2 cut(s) 167, 387
NdeII GATC 5 cut(s) 110, 142, 243, 278, 319
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 48, 193
PfeI GAWTC 2 cut(s) 37, 441
PflFI GACNNNGTC 1 cut(s) 85
PkrI GCNGC 3 cut(s) 268, 343, 403
PleI GAGTC 2 cut(s) 320, 402
PpsI GAGTC 2 cut(s) 320, 402
PspFI CCCAGC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 48, 193
PsuI RGATCY 2 cut(s) 110, 319
PsyI GACNNNGTC 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 344
SatI GCNGC 3 cut(s) 267, 342, 402
Sau3AI GATC 5 cut(s) 110, 142, 243, 278, 319
SchI GAGTC 2 cut(s) 321, 403
SetI ASST 7 cut(s) 86, 210, 218, 346, 377, 383, 459
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 435
SsiI CCGC 4 cut(s) 15, 29, 170, 266
SspMI CTAG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 463
TaiI ACGT 2 cut(s) 86, 218
TaqI TCGA 3 cut(s) 242, 281, 310
TaqII GACCGA 1 cut(s) 30
TasI AATT 1 cut(s) 435
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 37, 441
TscAI CASTG 1 cut(s) 466
TseI GCWGC 2 cut(s) 341, 401
TspDTI ATGAA 1 cut(s) 439
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 466
Tth111I GACNNNGTC 1 cut(s) 85
XspI CTAG 1 cut(s) 317
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.