RLG00000000198

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0001941
Physical Location & Seq
Forward (+)
920049 .. 921662
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000198

Sequence Viewer

Length: 588 bp
ATGGAGAAAATTTCAGGCTTTTACCTTTTCATCTTCGTCTTCCTTGTCTTCGGAGCCAGTGCGTTTGTTGAGCGGAGTTTGGGCCCTGATGGGGCTGTGTCGGTGGGCCAAGTTGCTGTTGCTACACCATCGGAGGGATGCGATACGGTGGTGATGGGGGCTTGGTCGGATCGTTGGTTGACGGATAAGGGCGGAGGGGATCTGGTTTCTTCTTCTGCTGGAGGCTTTGGATCTTCATCTGCGTGGGACTACGACGCTAGGCTGAAGAACGTCAGATTTTGGTGCGAGGTGAGGGGATTGGGTTCTGGTGGTGATGGCCGAGCGATGAGATCGGTTTGTTGGGACTTGGAGGGTGGTGTTCTGTTCGTCAGCGATGGCTATTGCAGTCTGGCATCCTCCATTGCAGGTCCTCGGGATGTGTTCGCCGGTGCTGCTGTCCAACTCCTTGATATACAATCCAACTATTATAATTCCCAAGTACGGGTGTTTGTGCTTATACACTGTATGCACACAAAGCAAGGGAATACAAAAATGGAGAAAACAGATGGCAGAATCAACAAAGAGTACCACGTTAAACATCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.13

Weight (kDa)

6.19

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 73
AciI CCGC 2 cut(s) 73, 192
AclWI GGATC 3 cut(s) 177, 207, 238
AcoI YGGCCR 1 cut(s) 316
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 480, 566
AfiI CCNNNNNNNGG 4 cut(s) 91, 134, 480, 481
AlwI GGATC 3 cut(s) 177, 207, 238
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 3 cut(s) 82, 106, 316
ApaI GGGCCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 4 cut(s) 82, 83, 106, 407
AsuHPI GGTGA 3 cut(s) 163, 301, 323
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 31, 40
BbvI GCAGC 1 cut(s) 418
BccI CCATC 6 cut(s) 83, 136, 148, 308, 368, 539
BfaI CTAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 395
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme18I GGWCC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 4 cut(s) 82, 83, 106, 407
BmiI GGNNCC 2 cut(s) 55, 84
BmsI GCATC 2 cut(s) 128, 401
BpiI GAAGAC 2 cut(s) 31, 40
BpmI CTGGAG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 134, 480, 481
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 399
Bse8I GATNNNNATC 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 3 cut(s) 143, 392, 421
BseJI GATNNNNATC 1 cut(s) 235
BseLI CCNNNNNNNGG 4 cut(s) 91, 134, 480, 481
BseMI GCAATG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 1 cut(s) 418
BshFI GGCC 3 cut(s) 84, 108, 318
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 2 cut(s) 260, 356
BslI CCNNNNNNNGG 4 cut(s) 91, 134, 480, 481
BsmFI GGGAC 2 cut(s) 260, 356
BsnI GGCC 3 cut(s) 84, 108, 318
BsoBI CYCGRG 1 cut(s) 411
Bsp120I GGGCCC 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 4 cut(s) 169, 199, 230, 329
BspACI CCGC 2 cut(s) 73, 192
BspANI GGCC 3 cut(s) 84, 108, 318
BspLI GGNNCC 2 cut(s) 55, 84
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 3 cut(s) 177, 207, 238
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 4 cut(s) 169, 199, 230, 329
Bst4CI ACNGT 2 cut(s) 148, 503
BstF5I GGATG 3 cut(s) 143, 392, 421
BstKTI GATC 4 cut(s) 172, 202, 233, 332
BstMBI GATC 4 cut(s) 169, 199, 230, 329
BstMWI GCNNNNNNNGC 2 cut(s) 431, 514
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 2 cut(s) 31, 40
BstX2I RGATCY 2 cut(s) 199, 230
BstYI RGATCY 2 cut(s) 199, 230
BsuRI GGCC 3 cut(s) 84, 108, 318
BtgZI GCGATG 2 cut(s) 338, 387
BtsCI GGATG 3 cut(s) 143, 392, 421
BtsIMutI CAGTG 2 cut(s) 64, 499
BveI ACCTGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 4 cut(s) 82, 83, 106, 407
CseI GACGC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 479, 565
CviQI GTAC 2 cut(s) 479, 565
DpnI GATC 4 cut(s) 171, 201, 232, 331
DpnII GATC 4 cut(s) 169, 199, 230, 329
EaeI YGGCCR 1 cut(s) 316
EciI GGCGGA 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 411
EcoO109I RGGNCCY 2 cut(s) 83, 407
EcoT38I GRGCYC 1 cut(s) 86
FaiI YATR 4 cut(s) 452, 468, 497, 506
FaqI GGGAC 2 cut(s) 260, 356
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 3 cut(s) 150, 379, 428
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 1 cut(s) 258
GluI GCNGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 3 cut(s) 84, 108, 318
HapII CCGG 1 cut(s) 426
HgaI GACGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 1 cut(s) 552
HpaII CCGG 1 cut(s) 426
HphI GGTGA 3 cut(s) 163, 301, 323
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 4 cut(s) 53, 133, 169, 275
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 1 cut(s) 257
HpyCH4III ACNGT 2 cut(s) 148, 503
HpyCH4IV ACGT 2 cut(s) 270, 570
HpyCH4V TGCA 3 cut(s) 384, 404, 508
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 514
HpySE526I ACGT 2 cut(s) 270, 570
Kzo9I GATC 4 cut(s) 169, 199, 230, 329
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 8 cut(s) 70, 99, 188, 204, 291, 374, 390, 439
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 2 cut(s) 128, 401
MaeI CTAG 1 cut(s) 258
MaeII ACGT 2 cut(s) 270, 570
MalI GATC 4 cut(s) 171, 201, 232, 331
MbiI CCGCTC 1 cut(s) 73
MboI GATC 4 cut(s) 169, 199, 230, 329
MboII GAAGA 7 cut(s) 25, 31, 40, 201, 204, 225, 277
MflI RGATCY 2 cut(s) 199, 230
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 2 cut(s) 9, 469
MmeI TCCRAC 3 cut(s) 147, 463, 483
MnlI CCTC 8 cut(s) 127, 188, 215, 280, 285, 343, 406, 420
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 1 cut(s) 241
MspI CCGG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 431, 514
NdeII GATC 4 cut(s) 169, 199, 230, 329
NlaIV GGNNCC 2 cut(s) 55, 84
NmeAIII GCCGAG 1 cut(s) 344
PfeI GAWTC 1 cut(s) 552
PkrI GCNGC 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 407
PsiI TTATAA 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 407
PspN4I GGNNCC 2 cut(s) 55, 84
PspOMI GGGCCC 1 cut(s) 82
PspPI GGNCC 4 cut(s) 82, 83, 106, 407
PspPPI RGGWCCY 1 cut(s) 407
PsuI RGATCY 2 cut(s) 199, 230
RsaI GTAC 2 cut(s) 480, 566
RsaNI GTAC 2 cut(s) 479, 565
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 573
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 4 cut(s) 169, 199, 230, 329
Sau96I GGNCC 4 cut(s) 82, 83, 106, 407
SduI GDGCHC 1 cut(s) 86
SetI ASST 5 cut(s) 27, 273, 291, 409, 573
SfaNI GCATC 2 cut(s) 128, 401
SgrAI CRCCGGYG 1 cut(s) 425
SinI GGWCC 1 cut(s) 407
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 2 cut(s) 9, 469
SsiI CCGC 2 cut(s) 73, 192
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 148, 503
TaiI ACGT 2 cut(s) 273, 573
TasI AATT 2 cut(s) 9, 469
TfiI GAWTC 1 cut(s) 552
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 2 cut(s) 64, 506
TseI GCWGC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 19, 225
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 64, 506
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 9
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.