Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001941

Physical Location & Seq

Genomic Coordinates Forward (+)

15856425 .. 15857177

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAGAAAATCTCAGGTTTCGGCCTCCTCATCTTCGTCTTTGTTGTCTTCGGAGTGGTTGGCGGTGATTACGGGGTGGAGTGGGATCCGGGTAGAAGCCACGGTGATCTCAGTGGGTTGCCTCCTTCCGGTGTGTCGGGTCCGATTTGTGGATCTATTGGTGTTGACGACTATTGTGATGGTGATTGGATTTGCTCTCTGGCGTTTGTCGCGGACGGTAGAGAATGGATTGGTTCCCAATCTGGGAAGCTGCGGCCTTCCGGTGGTGTGGGGTGGCTGGGTTCGATCAAGTCTAGTGTGATGGAGGCGGCCGTTACAAGATCGGAGCTCTCCGTGGGTTGGTGGTGGCTTCGAGGCCTCGATCTGGAAAGGACGAACGTCGCAACTGCTGATGGAGACGGTGCACTCCAACGGTGGCGTAGCTTCTCTTACGGGAGTCGGGCTGGTGGGCTGGGTGCCCTGAGCACTTTTTTAGGGGACTGGAATTGGGCCTGTTGTCTGGTATCAGGGGCTGCATTAGGGCTCATTTGCTCTAGGTCCTGGGCTTGTTTAATTTTAGAAGGGATGGAAGGTGATTTATCATTTTCCATTCCTAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

21.12

Weight (kDa)

4.52

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001941)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0242461
rosa_laevigata	RLG00000000198 RLG00000001395 RLG00000002534 RLG00000004260 RLG00000004509 RLG00000005005 RLG00000007730 RLG00000007778 RLG00000008977 RLG00000012806 RLG00000014111 RLG00000015644 RLG00000015853 RLG00000023399 RLG00000024480 RLG00000025907 RLG00000027839 RLG00000037045
rosa_multiflora	Rmu_sc0002184.1_g000017 Rmu_ssc0000281.1_g000033
rosa_roxburghii	Rroxscaffold_4G00320490 Rroxscaffold_5G00343060
rosa_rugosa	Rorug05G0168200 Rorug06G0037900 Rorug06G0190800
rosa_samantha	Rh2CG548800 Rh3CG231400 Rh3DG179100 Rh3DG231300 Rh3DG294200 Rh4DG182500 Rh4DG266400 Rh5AG258800 Rh5AG498800 Rh5CG543300 Rh5DG558400 Rh6BG482600 Rh6CG221300 Rh6CG487900 Rh6DG489100 Rh7AG193500 Rh7AG247400 Rh7BG033900 Rh7DG233300 Rh7DG253600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AccII	CGCG	1 cut(s)	212
AciI	CCGC	4 cut(s)	63, 212, 253, 308
AclWI	GGATC	3 cut(s)	80, 93, 160
AcoI	YGGCCR	1 cut(s)	309
AfiI	CCNNNNNNNGG	6 cut(s)	128, 149, 243, 263, 339, 364
AjnI	CCWGG	1 cut(s)	539
AluBI	AGCT	4 cut(s)	250, 328, 423, 597
AluI	AGCT	4 cut(s)	250, 328, 423, 597
Alw21I	GWGCWC	3 cut(s)	330, 406, 467
Alw26I	GTCTC	1 cut(s)	390
Alw44I	GTGCAC	1 cut(s)	402
AlwI	GGATC	3 cut(s)	80, 93, 160
AlwNI	CAGNNNCTG	1 cut(s)	512
AoxI	GGCC	5 cut(s)	22, 254, 309, 355, 489
ApaLI	GTGCAC	1 cut(s)	402
ApeKI	GCWGC	2 cut(s)	250, 512
AspS9I	GGNCC	3 cut(s)	140, 489, 537
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	4 cut(s)	77, 116, 194, 584
AvaII	GGWCC	2 cut(s)	140, 537
BaeGI	GKGCMC	2 cut(s)	406, 460
BamHI	GGATCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	455
BanII	GRGCYC	2 cut(s)	330, 525
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	3 cut(s)	330, 406, 467
BbvI	GCAGC	2 cut(s)	237, 499
BccI	CCATC	4 cut(s)	173, 295, 386, 559
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	3 cut(s)	294, 534, 594
BisI	GCNGC	4 cut(s)	251, 254, 309, 513
BlsI	GCNGC	4 cut(s)	252, 255, 310, 514
Bme1390I	CCNGG	2 cut(s)	90, 541
Bme18I	GGWCC	2 cut(s)	140, 537
BmgT120I	GGNCC	3 cut(s)	140, 489, 537
BmiI	GGNNCC	4 cut(s)	87, 141, 235, 457
BmrFI	CCNGG	2 cut(s)	90, 541
BoxI	GACNNNNGTC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	40
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	100, 333, 540
BsaWI	WCCGGW	2 cut(s)	128, 260
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 149, 243, 263, 339, 364
Bse1I	ACTGG	1 cut(s)	485
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	3 cut(s)	100, 333, 540
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	6 cut(s)	128, 149, 243, 263, 339, 364
BseMII	CTCAG	3 cut(s)	27, 124, 452
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	17
BseSI	GKGCMC	2 cut(s)	406, 460
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	237, 499
BseYI	CCCAGC	2 cut(s)	277, 451
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	5 cut(s)	24, 256, 311, 357, 491
BshNI	GGYRCC	1 cut(s)	455
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	3 cut(s)	330, 406, 467
BsiSI	CCGG	3 cut(s)	89, 129, 261
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	6 cut(s)	128, 149, 243, 263, 339, 364
BsmAI	GTCTC	1 cut(s)	390
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	5 cut(s)	24, 256, 311, 357, 491
Bsp1286I	GDGCHC	5 cut(s)	330, 406, 460, 467, 525
Bsp143I	GATC	6 cut(s)	85, 106, 152, 285, 320, 361
BspACI	CCGC	4 cut(s)	63, 212, 253, 308
BspANI	GGCC	5 cut(s)	24, 256, 311, 357, 491
BspCNI	CTCAG	3 cut(s)	26, 123, 453
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	4 cut(s)	87, 141, 235, 457
BspPI	GGATC	3 cut(s)	80, 93, 160
BspT107I	GGYRCC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	3 cut(s)	100, 333, 540
BssMI	GATC	6 cut(s)	85, 106, 152, 285, 320, 361
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	4 cut(s)	104, 218, 401, 414
BstDEI	CTNAG	3 cut(s)	13, 110, 461
BstDSI	CCRYGG	2 cut(s)	100, 333
BstF5I	GGATG	1 cut(s)	570
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	6 cut(s)	88, 109, 155, 288, 323, 364
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	6 cut(s)	85, 106, 152, 285, 320, 361
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	541
BstPAI	GACNNNNGTC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	88, 539
BstSLI	GKGCMC	2 cut(s)	406, 460
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	237, 499
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	2 cut(s)	85, 152
BstYI	RGATCY	2 cut(s)	85, 152
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	5 cut(s)	24, 256, 311, 357, 491
BtgI	CCRYGG	2 cut(s)	100, 333
BtsCI	GGATG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr13I	GGNCC	3 cut(s)	140, 489, 537
DdeI	CTNAG	3 cut(s)	13, 110, 461
DpnI	GATC	6 cut(s)	87, 108, 154, 287, 322, 363
DpnII	GATC	6 cut(s)	85, 106, 152, 285, 320, 361
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	328
EclXI	CGGCCG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	330, 525
Eco47I	GGWCC	2 cut(s)	140, 537
Eco52I	CGGCCG	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	539
EcoT38I	GRGCYC	2 cut(s)	330, 525
Esp3I	CGTCTC	1 cut(s)	390
FaqI	GGGAC	1 cut(s)	491
Fnu4HI	GCNGC	4 cut(s)	251, 254, 309, 513
FokI	GGATG	1 cut(s)	577
FriOI	GRGCYC	2 cut(s)	330, 525
Fsp4HI	GCNGC	4 cut(s)	251, 254, 309, 513
FspBI	CTAG	3 cut(s)	294, 534, 594
GluI	GCNGC	4 cut(s)	251, 254, 309, 513
GsaI	CCCAGC	2 cut(s)	281, 455
HaeIII	GGCC	5 cut(s)	24, 256, 311, 357, 491
HapII	CCGG	3 cut(s)	89, 129, 261
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	3 cut(s)	89, 129, 261
HphI	GGTGA	4 cut(s)	77, 116, 194, 584
Hpy166II	GTNNAC	2 cut(s)	166, 404
Hpy188I	TCNGA	3 cut(s)	53, 144, 325
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	166, 404
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	4 cut(s)	135, 267, 554, 563
HpyCH4III	ACNGT	4 cut(s)	104, 218, 401, 414
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	2 cut(s)	404, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	13, 110, 461
HpySE526I	ACGT	1 cut(s)	378
Kzo9I	GATC	6 cut(s)	85, 106, 152, 285, 320, 361
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	237, 499
MaeI	CTAG	3 cut(s)	294, 534, 594
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	6 cut(s)	87, 108, 154, 287, 322, 363
MboI	GATC	6 cut(s)	85, 106, 152, 285, 320, 361
MboII	GAAGA	2 cut(s)	25, 40
MflI	RGATCY	2 cut(s)	85, 152
MhlI	GDGCHC	5 cut(s)	330, 406, 460, 467, 525
MluCI	AATT	2 cut(s)	484, 552
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	6 cut(s)	35, 38, 132, 298, 347, 368
MseI	TTAA	1 cut(s)	551
MspI	CCGG	3 cut(s)	89, 129, 261
MspR9I	CCNGG	2 cut(s)	90, 541
MvaI	CCWGG	1 cut(s)	541
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	6 cut(s)	85, 106, 152, 285, 320, 361
NlaIV	GGNNCC	4 cut(s)	87, 141, 235, 457
PceI	AGGCCT	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	252, 255, 310, 514
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PpuMI	RGGWCCY	1 cut(s)	537
PshAI	GACNNNNGTC	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	539
PspFI	CCCAGC	2 cut(s)	277, 451
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	87, 141, 235, 457
PspPI	GGNCC	3 cut(s)	140, 489, 537
PspPPI	RGGWCCY	1 cut(s)	537
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	2 cut(s)	85, 152
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	4 cut(s)	251, 254, 309, 513
Sau3AI	GATC	6 cut(s)	85, 106, 152, 285, 320, 361
Sau96I	GGNCC	3 cut(s)	140, 489, 537
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	90, 541
SduI	GDGCHC	5 cut(s)	330, 406, 460, 467, 525
SetI	ASST	8 cut(s)	19, 252, 330, 381, 425, 539, 574, 599
SinI	GGWCC	2 cut(s)	140, 537
Sse9I	AATT	2 cut(s)	484, 552
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	4 cut(s)	63, 212, 253, 308
SspMI	CTAG	3 cut(s)	294, 534, 594
SstI	GAGCTC	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	88, 539
TaaI	ACNGT	4 cut(s)	104, 218, 401, 414
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	3 cut(s)	284, 352, 360
TasI	AATT	2 cut(s)	484, 552
TauI	GCSGC	2 cut(s)	256, 311
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	2 cut(s)	250, 512
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	118
VneI	GTGCAC	1 cut(s)	402
VpaK11BI	GGWCC	2 cut(s)	140, 537
XspI	CTAG	3 cut(s)	294, 534, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.