AT1G10140

Uncharacterised conserved protein UCP031279 (InterPro IPR016972)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000667
Physical Location & Seq
Reverse (-)
3322554 .. 3323735
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10140.1

Sequence Viewer

Length: 504 bp
ATGAAACAAAACCAGAGCAAGTTCTTGAGAATAATCTCAACACCTCTAAGAGCTTTAGGCAAGGCACGTGATTTCTACGTGAGAAGCATCACCGGTTGCGCAGCTCGTACTCAATATTCCTCCTCCGCCTCCGTCTCCGCTCCTTTTCCAAGAAGCCGGAGCTCCTCCTCCGCCGCCTTCTCCTCCTCCGCATCATCCCGGAGAACCACCGATTTCGGGATAGATGAAGATTACAGCGAGCTAGTGAGAGCTGCGTCGGTGAGGAGTTTAGGGCACAAGAATGAGATAGACATGTTGATACAAGAGAAGCTGCAACAGCAGAAGCAACAGAAGCAAGGAGGGTTGCCTAAGAGCTCGAGTGCTGGGATGGCGAGGATAGAGGAAGAGGAAGAAACAGAGGAAGGATCTGTGAATCCGAAGGTGAAGAAGACTAAGAAAGTCTCTGATCTTTTGTATCCTCGTAGCAAATCTTACGCCGTTACTACTAGTACCCCTATCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.37

Weight (kDa)

9.86

Isoelectric Point (pI)

78.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 140
AciI CCGC 5 cut(s) 126, 138, 171, 174, 189
AclWI GGATC 1 cut(s) 412
AcvI CACGTG 1 cut(s) 68
AfaI GTAC 2 cut(s) 109, 490
AfiI CCNNNNNNNGG 1 cut(s) 216
AflIII ACRYGT 1 cut(s) 291
AgeI ACCGGT 1 cut(s) 92
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 7 cut(s) 53, 104, 162, 241, 251, 310, 354
AluI AGCT 7 cut(s) 53, 104, 162, 241, 251, 310, 354
Alw21I GWGCWC 2 cut(s) 164, 356
Alw26I GTCTC 2 cut(s) 139, 445
AlwI GGATC 1 cut(s) 412
Ama87I CYCGRG 1 cut(s) 355
ApeKI GCWGC 3 cut(s) 101, 251, 310
AsiGI ACCGGT 1 cut(s) 92
AspLEI GCGC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 3 cut(s) 82, 271, 433
AvaI CYCGRG 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 276
BanII GRGCYC 2 cut(s) 164, 356
BbrPI CACGTG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 2 cut(s) 164, 356
BbvI GCAGC 3 cut(s) 113, 238, 297
BccI CCATC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 461
BciVI GTATCC 1 cut(s) 465
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 139, 445
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 2 cut(s) 242, 486
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 4 cut(s) 102, 174, 252, 311
BlsI GCNGC 4 cut(s) 103, 175, 253, 312
Bme1390I CCNGG 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 96, 200
BpiI GAAGAC 1 cut(s) 434
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 199
BsaAI YACGTR 2 cut(s) 68, 79
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse118I RCCGGY 1 cut(s) 92
BseGI GGATG 2 cut(s) 194, 372
BseLI CCNNNNNNNGG 1 cut(s) 216
BseRI GAGGAG 6 cut(s) 112, 154, 157, 172, 175, 277
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 3 cut(s) 113, 238, 297
BseYI CCCAGC 1 cut(s) 362
BshTI ACCGGT 1 cut(s) 92
BsiHKAI GWGCWC 2 cut(s) 164, 356
BsiHKCI CYCGRG 1 cut(s) 355
BsiSI CCGG 3 cut(s) 93, 157, 199
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 139, 445
BsmBI CGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 355
Bsp1286I GDGCHC 3 cut(s) 164, 276, 356
Bsp143I GATC 2 cut(s) 404, 445
BspACI CCGC 5 cut(s) 126, 138, 171, 174, 189
BspPI GGATC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssMI GATC 2 cut(s) 404, 445
Bst6I CTCTTC 1 cut(s) 378
BstBAI YACGTR 2 cut(s) 68, 79
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 47, 348, 432
BstF5I GGATG 2 cut(s) 194, 372
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 407, 448
BstMAI GTCTC 2 cut(s) 139, 445
BstMBI GATC 2 cut(s) 404, 445
BstMWI GCNNNNNNNGC 3 cut(s) 316, 331, 368
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 276
BstV1I GCAGC 3 cut(s) 113, 238, 297
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuI GTATCC 1 cut(s) 465
BtsCI GGATG 2 cut(s) 194, 372
Cac8I GCNNGC 1 cut(s) 239
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 92
CseI GACGC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 108, 489
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 1 cut(s) 292
CviJI RGCY 8 cut(s) 53, 104, 156, 162, 241, 251, 310, 354
CviKI_1 RGCY 8 cut(s) 53, 104, 156, 162, 241, 251, 310, 354
CviQI GTAC 2 cut(s) 108, 489
DdeI CTNAG 3 cut(s) 47, 348, 432
DpnI GATC 2 cut(s) 406, 447
DpnII GATC 2 cut(s) 404, 445
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 2 cut(s) 115, 160
Ecl136II GAGCTC 2 cut(s) 162, 354
Eco24I GRGCYC 2 cut(s) 164, 356
Eco53kI GAGCTC 2 cut(s) 162, 354
Eco72I CACGTG 1 cut(s) 68
Eco88I CYCGRG 1 cut(s) 355
EcoICRI GAGCTC 2 cut(s) 162, 354
EcoT38I GRGCYC 2 cut(s) 164, 356
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 1 cut(s) 295
FaiI YATR 1 cut(s) 293
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 102, 174, 252, 311
FokI GGATG 2 cut(s) 181, 379
FriOI GRGCYC 2 cut(s) 164, 356
Fsp4HI GCNGC 4 cut(s) 102, 174, 252, 311
FspBI CTAG 2 cut(s) 242, 486
FspI TGCGCA 1 cut(s) 100
GlaI GCGC 1 cut(s) 100
GluI GCNGC 4 cut(s) 102, 174, 252, 311
GsaI CCCAGC 1 cut(s) 366
HapII CCGG 3 cut(s) 93, 157, 199
HgaI GACGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 1 cut(s) 412
HpaII CCGG 3 cut(s) 93, 157, 199
HphI GGTGA 3 cut(s) 82, 271, 433
Hpy188I TCNGA 2 cut(s) 417, 445
Hpy188III TCNNGA 2 cut(s) 25, 217
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 187, 395, 412
HpyCH4IV ACGT 2 cut(s) 67, 78
HpyCH4V TGCA 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 331, 368
HpyF3I CTNAG 3 cut(s) 47, 348, 432
HpySE526I ACGT 2 cut(s) 67, 78
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 404, 445
LmnI GCTCC 3 cut(s) 145, 159, 167
LpnPI CCDG 5 cut(s) 26, 106, 170, 212, 348
Lsp1109I GCAGC 3 cut(s) 113, 238, 297
LweI GCATC 2 cut(s) 96, 200
MaeI CTAG 2 cut(s) 242, 486
MaeII ACGT 2 cut(s) 67, 78
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 406, 447
MbiI CCGCTC 1 cut(s) 140
MboI GATC 2 cut(s) 404, 445
MboII GAAGA 5 cut(s) 239, 395, 401, 436, 439
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 3 cut(s) 164, 276, 356
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 3 cut(s) 93, 157, 199
MspR9I CCNGG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 316, 331, 368
NciI CCSGG 1 cut(s) 199
NdeII GATC 2 cut(s) 404, 445
NlaIII CATG 1 cut(s) 295
NsbI TGCGCA 1 cut(s) 100
NspI RCATGY 1 cut(s) 295
PaeR7I CTCGAG 1 cut(s) 355
PciI ACATGT 1 cut(s) 291
PfeI GAWTC 1 cut(s) 412
PfoI TCCNGGA 1 cut(s) 197
PinAI ACCGGT 1 cut(s) 92
PkrI GCNGC 4 cut(s) 103, 175, 253, 312
PmaCI CACGTG 1 cut(s) 68
PmlI CACGTG 1 cut(s) 68
Ppu21I YACGTR 2 cut(s) 68, 79
PscI ACATGT 1 cut(s) 291
Psp124BI GAGCTC 2 cut(s) 164, 356
PspCI CACGTG 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 362
PspXI VCTCGAGB 1 cut(s) 355
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 2 cut(s) 109, 490
RsaNI GTAC 2 cut(s) 108, 489
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 2 cut(s) 164, 356
SatI GCNGC 4 cut(s) 102, 174, 252, 311
Sau3AI GATC 2 cut(s) 404, 445
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 3 cut(s) 164, 276, 356
SfaNI GCATC 2 cut(s) 96, 200
Sfr274I CTCGAG 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 25, 355
SmoI CTYRAG 2 cut(s) 25, 355
SpeI ACTAGT 1 cut(s) 485
SsiI CCGC 5 cut(s) 126, 138, 171, 174, 189
SspI AATATT 1 cut(s) 116
SspMI CTAG 2 cut(s) 242, 486
SstI GAGCTC 2 cut(s) 164, 356
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 2 cut(s) 70, 81
TaqI TCGA 1 cut(s) 356
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 412
TseI GCWGC 3 cut(s) 101, 251, 310
TspDTI ATGAA 2 cut(s) 17, 240
TspGWI ACGGA 1 cut(s) 121
XceI RCATGY 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 355
XspI CTAG 2 cut(s) 242, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.