FvH4_2g03520

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000667
Physical Location & Seq
Reverse (-)
2826779 .. 2827306
528 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03520.t1

Sequence Viewer

Length: 528 bp
ATGAGGCAGAGCAAAGCAACTAAGCAAAGCAAGTTGATTCGCTTTATATCTTCACCCATTAGGTCTCTAACCAAGGCAAAGAACTTCTACATGAGAAGTTTAGAAGATTGTGCTGCCAAGGTGGGCTATGGTGGCGGTGGCAGCGGTGTGGGCGGCTACACTGCTTCACAAGTTCCACACTTGCCCAAGAGCTTCAGCGCCAACTCCACCAGTTCGAACGATGATGAGGATTTGAGGCAGCTTCTAAGAACAGTGTCATCAAAGAAGAATAACAATGCAGAGAAAGGGAACAACAAGGCAGCAGGTTCATATATGCACCGGAGAGGAAGACCGAATATTAGTAATAGACAACCCATGATGAACAATGGGATGGGGATGAGGAGTTACAGCGTCGGATTGAAGATGGGAAGGATTGATGAGGAAAGGGCTTCCACTTTTGAGGAAGATATAGACGATGTGAAGCCGGATATTTATACCAGAAGCAGAAGTTATGCTGTTAATAACAAGAGAAATGCTGGATTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.37

Weight (kDa)

10.11

Isoelectric Point (pI)

69.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AciI CCGC 3 cut(s) 135, 144, 153
AcuI CTGAAG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 400
AluBI AGCT 2 cut(s) 192, 241
AluI AGCT 2 cut(s) 192, 241
Alw26I GTCTC 1 cut(s) 69
ApeKI GCWGC 4 cut(s) 113, 141, 238, 299
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 334
BbvI GCAGC 4 cut(s) 100, 153, 250, 311
BccI CCATC 2 cut(s) 364, 397
BcoDI GTCTC 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 5 cut(s) 114, 142, 154, 239, 300
BlsI GCNGC 5 cut(s) 115, 143, 155, 240, 301
BpiI GAAGAC 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 72, 117
BsaWI WCCGGW 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 2 cut(s) 72, 117
BseGI GGATG 2 cut(s) 375, 381
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 394
BseXI GCAGC 4 cut(s) 100, 153, 250, 311
BsiSI CCGG 2 cut(s) 319, 464
BsmAI GTCTC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 215
BspACI CCGC 3 cut(s) 135, 144, 153
BspMI ACCTGC 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 72, 117
BssT1I CCWWGG 2 cut(s) 72, 117
Bst4CI ACNGT 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 21, 245
BstF5I GGATG 2 cut(s) 375, 381
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstMAI GTCTC 1 cut(s) 69
BstMWI GCNNNNNNNGC 3 cut(s) 132, 141, 150
BstV1I GCAGC 4 cut(s) 100, 153, 250, 311
BstV2I GAAGAC 1 cut(s) 334
BtsCI GGATG 2 cut(s) 375, 381
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 258
BveI ACCTGC 1 cut(s) 293
CfoI GCGC 1 cut(s) 200
CseI GACGC 1 cut(s) 379
CviAII CATG 2 cut(s) 91, 355
CviJI RGCY 6 cut(s) 126, 156, 192, 241, 428, 463
CviKI_1 RGCY 6 cut(s) 126, 156, 192, 241, 428, 463
DdeI CTNAG 2 cut(s) 21, 245
Eco130I CCWWGG 2 cut(s) 72, 117
Eco31I GGTCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 72, 117
ErhI CCWWGG 2 cut(s) 72, 117
FaeI CATG 2 cut(s) 94, 358
FatI CATG 2 cut(s) 90, 354
Fnu4HI GCNGC 5 cut(s) 114, 142, 154, 239, 300
FokI GGATG 2 cut(s) 382, 388
Fsp4HI GCNGC 5 cut(s) 114, 142, 154, 239, 300
GlaI GCGC 1 cut(s) 199
GluI GCNGC 5 cut(s) 114, 142, 154, 239, 300
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 2 cut(s) 319, 464
HgaI GACGC 1 cut(s) 379
HhaI GCGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 94, 358
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 1 cut(s) 37
HpaII CCGG 2 cut(s) 319, 464
HphI GGTGA 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 395
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 402
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 278, 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 141, 150
HpyF3I CTNAG 2 cut(s) 21, 245
Hsp92II CATG 2 cut(s) 94, 358
HspAI GCGC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 223, 288, 332, 477, 490, 501
Lsp1109I GCAGC 4 cut(s) 100, 153, 250, 311
MaeIII GTNAC 1 cut(s) 383
MboII GAAGA 6 cut(s) 42, 116, 277, 339, 412, 455
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 6 cut(s) 220, 228, 317, 372, 412, 433
MseI TTAA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 319, 464
MwoI GCNNNNNNNGC 3 cut(s) 132, 141, 150
NlaIII CATG 2 cut(s) 94, 358
NspV TTCGAA 1 cut(s) 215
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 5 cut(s) 115, 143, 155, 240, 301
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 5 cut(s) 114, 142, 154, 239, 300
SetI ASST 5 cut(s) 65, 123, 194, 243, 307
SfuI TTCGAA 1 cut(s) 215
SsiI CCGC 3 cut(s) 135, 144, 153
SspI AATATT 1 cut(s) 337
StyI CCWWGG 2 cut(s) 72, 117
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 215
TaqII GACCGA 1 cut(s) 346
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 2 cut(s) 166, 258
TseI GCWGC 4 cut(s) 113, 141, 238, 299
TspDTI ATGAA 2 cut(s) 297, 374
TspRI CASTG 2 cut(s) 166, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.