Rorug05G0534300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000667
Physical Location & Seq
Reverse (-)
72234353 .. 72235518
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0534300.1

Sequence Viewer

Length: 1080 bp
ATGGATTTGCCGATCTACATACAGTTTGCATGCCGTGAGAATGGAAGGATTCAGAATTGGTGGATTGTGATCGAGGATAGAGGTGGTGAAGAAGAAGAAGAAGAAGATGGGTCGCACAGTCTCGTCGTCGCCGACTCCCGTTTAATACTAGTCGATGGCTTTTATCGTACTAAACATGGTGAGTATGACGATTTTGACGGATTTCACCAACTTGACTTGCGAAGCTCGCCACTCTGTTGGAGCAGAGTCAAGTATAACTTTAAGAGACCAGAAGAATTCATTTTTCTGAAAGAGGCGGCGGTTTCCAAGGCCGGTGATCTTTATGTGGTGGGAAATAAGGCGGTCCGCATCCGCTTTTGGTCGCACCAAATATGTGAATTAAGATCTAAATGTTCTAAATTTAGACGTGAATCAAGATGTGAATGTCCTCCTGCTATCTGTGAAGAAGTTCTTCCATCGTGCGATTGGCGATTCTTTCCGCCTCTACCTGCCTCTGATACCGGTGCCGAGTTGGAAGCTACTGTTTTGCTTGCTCTTACTGAGACCAAGCTTTTCCTGTTTTGCCCCATCTTCGGCTCCATGTTTGGTCAATTGGTCTGCGGTGATTTGCTATCTGGCGATTGGGAGATCCTTCATGACCATGTATATTGCTCTAATTGGTCCACCGGCGTGGTGCTGAGAGACTCGTATTTGATTTCCTTTGGAGTTTGGGATCCCAACTCCACAGAATATCGTCCGGCTTTATACATTTTTGATATTGGTCGACGTACATGGCTCTCCAAACTTGTTCAGGGACTCCCAAATGATGGAATCGTCCTACCTACCACAGAAGAAGGCGAAGGCGAAGTTATTTTCCACCAATTCCTAATGCAAGTCCAGAGACATGAACTGAAATTCGCTCTGGTTTGGGGGCACGAGGGCACCTCAGACCCCTGCCAGACTCAAGTTCATTGGTCCAAATTCATACTCCACACCAACAACAACCAAGACTCAAGTGCCGCACCCTTGTACGCTCAACTCTTATCTTCTGGAGTCTGTCTTGGAGGTGACACCAATTTGATCAATAGTACCATTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

40.9

Weight (kDa)

5.02

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 2 cut(s) 503, 920
AccB7I CCANNNNNTGG 1 cut(s) 806
AccI GTMKAC 1 cut(s) 763
AciI CCGC 8 cut(s) 296, 299, 341, 346, 352, 479, 600, 999
AclWI GGATC 3 cut(s) 622, 707, 720
AcsI RAATTY 4 cut(s) 275, 398, 893, 959
AfaI GTAC 4 cut(s) 169, 769, 1010, 1069
AfiI CCNNNNNNNGG 2 cut(s) 572, 806
AgeI ACCGGT 1 cut(s) 500
AhlI ACTAGT 1 cut(s) 148
AjiI CACGTC 1 cut(s) 407
AleI CACNNNNGTG 1 cut(s) 668
AluBI AGCT 3 cut(s) 225, 518, 550
AluI AGCT 3 cut(s) 225, 518, 550
Alw26I GTCTC 5 cut(s) 125, 259, 536, 675, 874
AlwI GGATC 3 cut(s) 622, 707, 720
AoxI GGCC 1 cut(s) 309
ApoI RAATTY 4 cut(s) 275, 398, 893, 959
AsiGI ACCGGT 1 cut(s) 500
Asp700I GAANNNNTTC 2 cut(s) 447, 450
AspS9I GGNCC 3 cut(s) 343, 660, 954
AsuHPI GGTGA 6 cut(s) 98, 191, 197, 326, 614, 1058
AvaII GGWCC 3 cut(s) 343, 660, 954
BaeGI GKGCMC 2 cut(s) 915, 923
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 2 cut(s) 503, 920
BauI CACGAG 1 cut(s) 914
BccI CCATC 5 cut(s) 101, 149, 463, 575, 800
BceAI ACGGC 1 cut(s) 18
BclI TGATCA 1 cut(s) 1059
BcoDI GTCTC 5 cut(s) 125, 259, 536, 675, 874
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 496
BglII AGATCT 1 cut(s) 383
BisI GCNGC 2 cut(s) 297, 999
BlsI GCNGC 2 cut(s) 298, 1000
Bme18I GGWCC 3 cut(s) 343, 660, 954
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 3 cut(s) 343, 660, 954
BmiI GGNNCC 4 cut(s) 505, 577, 714, 922
BmsI GCATC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 908, 940
BpmI CTGGAG 1 cut(s) 1050
BpuEI CTTGAG 2 cut(s) 927, 976
BsaBI GATNNNNATC 1 cut(s) 68
BsaI GGTCTC 2 cut(s) 259, 536
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 806
Bse118I RCCGGY 3 cut(s) 311, 500, 665
Bse8I GATNNNNATC 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 348
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 2 cut(s) 572, 806
BseMII CTCAG 3 cut(s) 531, 668, 939
BseSI GKGCMC 2 cut(s) 915, 923
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 2 cut(s) 503, 920
BshTI ACCGGT 1 cut(s) 500
BsiSI CCGG 4 cut(s) 312, 501, 666, 737
BslFI GGGAC 1 cut(s) 807
BslI CCNNNNNNNGG 2 cut(s) 572, 806
BsmAI GTCTC 5 cut(s) 125, 259, 536, 675, 874
BsmFI GGGAC 1 cut(s) 807
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 2 cut(s) 259, 536
Bsp1286I GDGCHC 2 cut(s) 915, 923
Bsp143I GATC 7 cut(s) 12, 69, 316, 383, 627, 712, 1059
BspACI CCGC 8 cut(s) 296, 299, 341, 346, 352, 479, 600, 999
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 3 cut(s) 532, 669, 938
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 4 cut(s) 505, 577, 714, 922
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 3 cut(s) 622, 707, 720
BspT107I GGYRCC 2 cut(s) 503, 920
BspTNI GGTCTC 2 cut(s) 259, 536
BsrFI RCCGGY 3 cut(s) 311, 500, 665
BssAI RCCGGY 3 cut(s) 311, 500, 665
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 7 cut(s) 12, 69, 316, 383, 627, 712, 1059
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 914
Bst4CI ACNGT 3 cut(s) 24, 119, 523
BstC8I GCNNGC 3 cut(s) 31, 227, 531
BstDEI CTNAG 3 cut(s) 540, 677, 925
BstF5I GGATG 1 cut(s) 348
BstKTI GATC 7 cut(s) 15, 72, 319, 386, 630, 715, 1062
BstMAI GTCTC 5 cut(s) 125, 259, 536, 675, 874
BstMBI GATC 7 cut(s) 12, 69, 316, 383, 627, 712, 1059
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 33
BstSLI GKGCMC 2 cut(s) 915, 923
BstX2I RGATCY 3 cut(s) 383, 627, 712
BstXI CCANNNNNNTGG 2 cut(s) 237, 670
BstYI RGATCY 3 cut(s) 383, 627, 712
BsuRI GGCC 1 cut(s) 311
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 3 cut(s) 31, 227, 531
CciI TCATGA 1 cut(s) 634
Cfr10I RCCGGY 3 cut(s) 311, 500, 665
Cfr13I GGNCC 3 cut(s) 343, 660, 954
CpoI CGGWCCG 1 cut(s) 343
Csp6I GTAC 4 cut(s) 168, 768, 1009, 1068
CspAI ACCGGT 1 cut(s) 500
CspI CGGWCCG 1 cut(s) 343
CviAII CATG 7 cut(s) 30, 176, 580, 635, 641, 771, 884
CviJI RGCY 8 cut(s) 159, 225, 311, 518, 550, 576, 740, 775
CviKI_1 RGCY 8 cut(s) 159, 225, 311, 518, 550, 576, 740, 775
CviQI GTAC 4 cut(s) 168, 768, 1009, 1068
DdeI CTNAG 3 cut(s) 540, 677, 925
DpnI GATC 7 cut(s) 14, 71, 318, 385, 629, 714, 1061
DpnII GATC 7 cut(s) 12, 69, 316, 383, 627, 712, 1059
EciI GGCGGA 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 306
Eco31I GGTCTC 2 cut(s) 259, 536
Eco47I GGWCC 3 cut(s) 343, 660, 954
EcoRI GAATTC 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 7 cut(s) 33, 179, 583, 638, 644, 774, 887
FalI AAGNNNNNCTT 4 cut(s) 242, 274, 435, 467
FaqI GGGAC 1 cut(s) 807
FatI CATG 7 cut(s) 29, 175, 579, 634, 640, 770, 883
FbaI TGATCA 1 cut(s) 1059
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 2 cut(s) 297, 999
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 297, 999
FspBI CTAG 1 cut(s) 149
GluI GCNGC 2 cut(s) 297, 999
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 1 cut(s) 311
HapII CCGG 4 cut(s) 312, 501, 666, 737
Hin1II CATG 7 cut(s) 33, 179, 583, 638, 644, 774, 887
HincII GTYRAC 1 cut(s) 764
HindII GTYRAC 1 cut(s) 764
HindIII AAGCTT 1 cut(s) 548
HpaII CCGG 4 cut(s) 312, 501, 666, 737
HphI GGTGA 6 cut(s) 98, 191, 197, 326, 614, 1058
Hpy166II GTNNAC 2 cut(s) 663, 764
Hpy188I TCNGA 4 cut(s) 54, 288, 496, 928
Hpy188III TCNNGA 4 cut(s) 414, 635, 877, 1029
Hpy8I GTNNAC 2 cut(s) 663, 764
Hpy99I CGWCG 3 cut(s) 128, 131, 768
HpyAV CCTTC 4 cut(s) 39, 641, 827, 833
HpyCH4III ACNGT 3 cut(s) 24, 119, 523
HpyCH4IV ACGT 2 cut(s) 406, 766
HpyCH4V TGCA 2 cut(s) 29, 871
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 3 cut(s) 540, 677, 925
HpySE526I ACGT 2 cut(s) 406, 766
Hsp92II CATG 7 cut(s) 33, 179, 583, 638, 644, 774, 887
Ksp22I TGATCA 1 cut(s) 1059
Kzo9I GATC 7 cut(s) 12, 69, 316, 383, 627, 712, 1059
LmnI GCTCC 2 cut(s) 240, 581
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 149
MaeII ACGT 2 cut(s) 406, 766
MaeIII GTNAC 1 cut(s) 1046
MalI GATC 7 cut(s) 14, 71, 318, 385, 629, 714, 1061
MboI GATC 7 cut(s) 12, 69, 316, 383, 627, 712, 1059
MfeI CAATTG 1 cut(s) 590
MflI RGATCY 3 cut(s) 383, 627, 712
MhlI GDGCHC 2 cut(s) 915, 923
MlyI GAGTC 7 cut(s) 128, 255, 677, 789, 934, 983, 1041
MmeI TCCRAC 2 cut(s) 218, 492
MnlI CCTC 9 cut(s) 67, 74, 286, 438, 492, 502, 910, 934, 1037
MroXI GAANNNNTTC 2 cut(s) 447, 450
MseI TTAA 3 cut(s) 143, 261, 380
MslI CAYNNNNRTG 2 cut(s) 639, 668
MspI CCGG 4 cut(s) 312, 501, 666, 737
MunI CAATTG 1 cut(s) 590
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 7 cut(s) 12, 69, 316, 383, 627, 712, 1059
NlaIII CATG 7 cut(s) 33, 179, 583, 638, 644, 774, 887
NlaIV GGNNCC 4 cut(s) 505, 577, 714, 922
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 1046
NspI RCATGY 1 cut(s) 33
OliI CACNNNNGTG 1 cut(s) 668
PaeI GCATGC 1 cut(s) 33
PagI TCATGA 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 2 cut(s) 447, 450
PfeI GAWTC 4 cut(s) 49, 410, 471, 810
PflMI CCANNNNNTGG 1 cut(s) 806
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 2 cut(s) 298, 1000
PleI GAGTC 7 cut(s) 128, 254, 677, 789, 934, 983, 1040
PpsI GAGTC 7 cut(s) 128, 254, 677, 789, 934, 983, 1040
PspN4I GGNNCC 4 cut(s) 505, 577, 714, 922
PspPI GGNCC 3 cut(s) 343, 660, 954
PsuI RGATCY 3 cut(s) 383, 627, 712
RsaI GTAC 4 cut(s) 169, 769, 1010, 1069
RsaNI GTAC 4 cut(s) 168, 768, 1009, 1068
RseI CAYNNNNRTG 2 cut(s) 639, 668
Rsr2I CGGWCCG 1 cut(s) 343
RsrII CGGWCCG 1 cut(s) 343
SalI GTCGAC 1 cut(s) 762
SaqAI TTAA 3 cut(s) 143, 261, 380
SatI GCNGC 2 cut(s) 297, 999
Sau3AI GATC 7 cut(s) 12, 69, 316, 383, 627, 712, 1059
Sau96I GGNCC 3 cut(s) 343, 660, 954
SchI GAGTC 7 cut(s) 128, 255, 677, 789, 934, 983, 1041
SduI GDGCHC 2 cut(s) 915, 923
SfaNI GCATC 1 cut(s) 357
SgrAI CRCCGGYG 1 cut(s) 665
SinI GGWCC 3 cut(s) 343, 660, 954
SmiMI CAYNNNNRTG 2 cut(s) 639, 668
SmlI CTYRAG 2 cut(s) 942, 991
SmoI CTYRAG 2 cut(s) 942, 991
SpeI ACTAGT 1 cut(s) 148
SphI GCATGC 1 cut(s) 33
SsiI CCGC 8 cut(s) 296, 299, 341, 346, 352, 479, 600, 999
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 24, 119, 523
TaiI ACGT 2 cut(s) 409, 769
TaqI TCGA 3 cut(s) 72, 153, 763
TauI GCSGC 2 cut(s) 299, 1001
TfiI GAWTC 4 cut(s) 49, 410, 471, 810
Tru1I TTAA 3 cut(s) 143, 261, 380
Tru9I TTAA 3 cut(s) 143, 261, 380
TseFI GTSAC 1 cut(s) 1046
Tsp45I GTSAC 1 cut(s) 1046
TspDTI ATGAA 5 cut(s) 268, 623, 900, 938, 952
TspGWI ACGGA 1 cut(s) 213
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 3 cut(s) 343, 660, 954
XapI RAATTY 4 cut(s) 275, 398, 893, 959
XceI RCATGY 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 462
XmiI GTMKAC 1 cut(s) 763
XmnI GAANNNNTTC 2 cut(s) 447, 450
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.