Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Forward (+)

62027455 .. 62027964

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015121

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGCAAAGCAAGTTGATGCGCTTCATTTCTACACCCATTAGGACCTTAATAAAGGCCAAGAACTTCTACATGAGGAACCTCGAAGATTGTGCAGGTAAGGTGGGTTATGGTGGTGCAGGTGTCAGTGGTTACACCGCTTCGAAAGTTCACTTGCCTAGGAGCTTTAGTGTCAACTCTTCGAGTTCAAATGGTGATGAGGATTTGAAGCAGCTACGCAGAACCGTTTCGACAAAAAAGAACAACGATGTGAAGAAAGAGGGTAACAGAGCAGCAGGAGGTTTCGACACTCAGAGAACGCCGATTGTTAGAGAACTTCCCATTGTAAAACAACGCAAAATGAATAGTGGAATGGGGATGAGGAGTTATAGTGTTGGCCTGAAAATGGGAAGGACTGATGAAGAAATAGCTTCTACTTTTAAGGAAGATGATGAAGTCGATGTCAAGGCAGATCTGTATTCAAGAAGCAGAAGTTATGCTGTTAAAAATAGAAATGCTGGGTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.82

Weight (kDa)

10.03

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
Acc36I	ACCTGC	2 cut(s)	86, 110
AciI	CCGC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	189, 208, 462
AluBI	AGCT	3 cut(s)	165, 214, 410
AluI	AGCT	3 cut(s)	165, 214, 410
AoxI	GGCC	2 cut(s)	57, 376
ApeKI	GCWGC	2 cut(s)	211, 272
Asp700I	GAANNNNTTC	1 cut(s)	226
AspA2I	CCTAGG	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	45
AvrII	CCTAGG	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	223, 284
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BfaI	CTAG	1 cut(s)	159
BfuAI	ACCTGC	2 cut(s)	86, 110
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	2 cut(s)	212, 273
BlnI	CCTAGG	1 cut(s)	158
BlsI	GCNGC	2 cut(s)	213, 274
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	80
BmsI	GCATC	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	158
BsaXI	ACNNNNNCTCC	4 cut(s)	154, 184, 355, 385
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	2 cut(s)	223, 284
BseYI	CCCAGC	1 cut(s)	497
BsgI	GTGCAG	2 cut(s)	114, 138
BshFI	GGCC	2 cut(s)	59, 378
BslI	CCNNNNNNNGG	1 cut(s)	385
BsnI	GGCC	2 cut(s)	59, 378
Bsp119I	TTCGAA	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	59, 378
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	80
BspMI	ACCTGC	2 cut(s)	86, 110
BspT104I	TTCGAA	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	1 cut(s)	451
BssT1I	CCWWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	223, 284
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	59, 378
BtsCI	GGATG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	2 cut(s)	86, 110
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	45
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	5 cut(s)	59, 165, 214, 378, 410
CviKI_1	RGCY	5 cut(s)	59, 165, 214, 378, 410
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	1 cut(s)	76
FaiI	YATR	5 cut(s)	74, 111, 369, 477, 508
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	212, 273
FokI	GGATG	1 cut(s)	370
Fsp4HI	GCNGC	2 cut(s)	212, 273
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	212, 273
GsaI	CCCAGC	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	59, 378
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	151, 175
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	1 cut(s)	462
Hpy8I	GTNNAC	2 cut(s)	151, 175
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	2 cut(s)	95, 119
HpyF3I	CTNAG	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	5 cut(s)	81, 105, 261, 392, 483
Lsp1109I	GCAGC	2 cut(s)	223, 284
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	131, 263
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	5 cut(s)	98, 171, 265, 413, 437
MflI	RGATCY	1 cut(s)	451
MnlI	CCTC	6 cut(s)	69, 92, 193, 253, 272, 354
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	3 cut(s)	50, 420, 483
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	143
PaqCI	CACCTGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	213, 274
PpuMI	RGGWCCY	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	45
PspPPI	RGGWCCY	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	451
SaqAI	TTAA	3 cut(s)	50, 420, 483
SatI	GCNGC	2 cut(s)	212, 273
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	1 cut(s)	45
SetI	ASST	9 cut(s)	50, 84, 100, 105, 124, 167, 216, 283, 412
SfaNI	GCATC	1 cut(s)	9
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	1 cut(s)	45
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	6 cut(s)	84, 143, 182, 230, 285, 438
Tru1I	TTAA	3 cut(s)	50, 420, 483
Tru9I	TTAA	3 cut(s)	50, 420, 483
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	2 cut(s)	211, 272
TspDTI	ATGAA	5 cut(s)	16, 17, 356, 414, 447
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	45
XmaJI	CCTAGG	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.