Rw6G004580

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000667
Physical Location & Seq
Reverse (-)
7400015 .. 7400566
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004580.1

Sequence Viewer

Length: 525 bp
ATGAGGCAGAGCAAAGCAACTAGGCAAAGCAAGTTGATGCGCTTTATTTCTTCACCCATTAGGACTCTAACCAAGGCCAAGAACTTCTACATGAAGAGTTTAGAAGATTGTGCTGCGAAGGTGGGTTATGGAGGCGGTGGCGGTGGTGTGGGTAGTTACACTGCTTCACAAGTACCACACTTGCCCAGGAGCTTCAGCGTCAACTCCTCCAGTTCGAACGATGATGAGGATTTGAGGCAGCTTCTAAGAACAGCGTCATCAAAGAAGAACAACGATGCAGAGAAACGGTACAACAAGGTAGCAGGGTCAGAGATGCACAGAAGAGGAAGACCAAATGTTAGTATTAGACAACCCACAATGAATAATGGGATGGGGATGAGGAGTTATAGTGTTGGATTGAAGATGGGAAGGATTGATGAGGAAAGGGCTTCGGCTTTTGAGGAAGATGAAGTCGATGTGAAGGCGGATTTTTATACAAGAAGCAGAAGTTATGCTGTTAACAAGAGAAATACTGTGTTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.42

Weight (kDa)

10.08

Isoelectric Point (pI)

68.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 135, 141, 464
AcuI CTGAAG 1 cut(s) 178
AfaI GTAC 2 cut(s) 174, 290
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 1 cut(s) 185
AluBI AGCT 2 cut(s) 192, 241
AluI AGCT 2 cut(s) 192, 241
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 2 cut(s) 113, 238
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 100, 250
BccI CCATC 2 cut(s) 364, 397
BciT130I CCWGG 1 cut(s) 187
BfaI CTAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 114, 239
BlsI GCNGC 2 cut(s) 115, 240
Bme1390I CCNGG 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 3 cut(s) 27, 265, 303
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 72, 185
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bse1I ACTGG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 72, 185
BseGI GGATG 2 cut(s) 375, 381
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 196, 394
BseXI GCAGC 2 cut(s) 100, 250
BshFI GGCC 1 cut(s) 77
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 215
BspACI CCGC 3 cut(s) 135, 141, 464
BspANI GGCC 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 215
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 72, 185
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 288, 514
Bst6I CTCTTC 2 cut(s) 89, 316
BstBI TTCGAA 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 375, 381
BstHHI GCGC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 185
BstV1I GCAGC 2 cut(s) 100, 250
BstV2I GAAGAC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 2 cut(s) 375, 381
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
CfoI GCGC 1 cut(s) 42
CseI GACGC 2 cut(s) 187, 243
Csp6I GTAC 2 cut(s) 173, 289
CviAII CATG 1 cut(s) 91
CviJI RGCY 5 cut(s) 77, 192, 241, 428, 434
CviKI_1 RGCY 5 cut(s) 77, 192, 241, 428, 434
CviQI GTAC 2 cut(s) 173, 289
DdeI CTNAG 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 89, 316
EarI CTCTTC 2 cut(s) 89, 316
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 1 cut(s) 94
FaiI YATR 6 cut(s) 92, 129, 387, 474, 492, 523
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 114, 239
FokI GGATG 2 cut(s) 382, 388
Fsp4HI GCNGC 2 cut(s) 114, 239
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 114, 239
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 1 cut(s) 77
HgaI GACGC 2 cut(s) 187, 243
HhaI GCGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 2 cut(s) 202, 499
HindII GTYRAC 2 cut(s) 202, 499
HinfI GANTC 1 cut(s) 64
HpaI GTTAAC 1 cut(s) 499
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 202, 499
Hpy188I TCNGA 1 cut(s) 310
Hpy8I GTNNAC 2 cut(s) 202, 499
HpyAV CCTTC 3 cut(s) 112, 402, 454
HpyCH4III ACNGT 2 cut(s) 288, 514
HpyCH4V TGCA 2 cut(s) 278, 316
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 40
KspAI GTTAAC 1 cut(s) 499
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 4 cut(s) 172, 199, 223, 288
Lsp1109I GCAGC 2 cut(s) 100, 250
LweI GCATC 3 cut(s) 27, 265, 303
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 8 cut(s) 42, 106, 116, 277, 333, 339, 412, 455
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 8 cut(s) 125, 217, 220, 228, 317, 372, 412, 433
MseI TTAA 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 187
NlaIII CATG 1 cut(s) 94
NspV TTCGAA 1 cut(s) 215
PkrI GCNGC 2 cut(s) 115, 240
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
RsaI GTAC 2 cut(s) 174, 290
RsaNI GTAC 2 cut(s) 173, 289
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 2 cut(s) 114, 239
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 187
SetI ASST 4 cut(s) 123, 194, 243, 300
SfaNI GCATC 3 cut(s) 27, 265, 303
SfuI TTCGAA 1 cut(s) 215
SsiI CCGC 3 cut(s) 135, 141, 464
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 185
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 288, 514
TaqI TCGA 2 cut(s) 215, 453
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 1 cut(s) 166
TseI GCWGC 2 cut(s) 113, 238
TspDTI ATGAA 3 cut(s) 107, 374, 462
TspRI CASTG 1 cut(s) 166
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.