RLG00000015112

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000667
Physical Location & Seq
Forward (+)
61912288 .. 61919727
7440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015112

Sequence Viewer

Length: 591 bp
ATGGACGTGTGTCTAGAGCCGTTTTCGGCTAACCGCGGCGGCTGGTTTGAAGGTGGGAGAGCTTCGAAGCGCCGGGCGGTGGATTGGTGGTTTAAGAGCGGTTTGGATCCGATGGCTCGGCCGTCTGTGCTTAGCGCCTGGGTTTGGTTTGGTGTCGGTGGGGAAATCGGTGCAGATCAAGCACATCGGCCATTTGTTGAGCGTGTCGGCATGCAGGTGATTAAGGCTTGCCTGAGAGAGGTAGCAGAGATACTTGCTCCCAATCAAATTCGTCTGATTTTGGAGTTCATTGTCTCTAACCAGGTTATTAAGGCTAAGAACTTCTACATGAGGAGTTTAGAAGATTGTGCTGCCAAGGTGGGTTACGGCGGTGGCGGTGTGGGCGGTTACATTGCTTCACAAGTTCCACAGTTGCCAAGGAGCTTCAGCAATGGGATAGGGATGAGAAGTTATGGTGTTGGATTGAAGATGGGAAGGATTGATGAGGAAAGGGCTTCGACTTTTGAGGAAGATGAAGTCGATGCGAAGGTGGATGTTTATACTAGAAGCAGGAGTTCTTCTGTTAACAAGAGAGATGTTGGATTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.63

Weight (kDa)

8.8

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 205
AccBSI CCGCTC 1 cut(s) 99
AccII CGCG 1 cut(s) 36
AciI CCGC 8 cut(s) 34, 36, 39, 77, 99, 369, 375, 384
AclWI GGATC 2 cut(s) 101, 114
AcoI YGGCCR 2 cut(s) 119, 188
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 409
AfiI CCNNNNNNNGG 3 cut(s) 79, 144, 238
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 2 cut(s) 50, 466
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 2 cut(s) 137, 300
AluBI AGCT 2 cut(s) 62, 423
AluI AGCT 2 cut(s) 62, 423
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 2 cut(s) 101, 114
AoxI GGCC 2 cut(s) 119, 188
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 267
AspLEI GCGC 2 cut(s) 72, 137
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 106, 463
BceAI ACGGC 3 cut(s) 4, 106, 382
BciT130I CCWGG 2 cut(s) 139, 302
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 2 cut(s) 14, 543
BfoI RGCGCY 2 cut(s) 73, 138
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 3 cut(s) 37, 40, 351
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 3 cut(s) 38, 41, 352
Bme1390I CCNGG 3 cut(s) 74, 139, 302
BmgBI CACGTC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 3 cut(s) 74, 139, 302
BmsI GCATC 1 cut(s) 511
BoxI GACNNNNGTC 1 cut(s) 9
Bpu1102I GCTNAGC 1 cut(s) 131
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 4 cut(s) 34, 138, 354, 416
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 144, 238
Bse3DI GCAATG 2 cut(s) 390, 436
BseBI CCWGG 2 cut(s) 139, 302
BseDI CCNNGG 4 cut(s) 34, 138, 354, 416
BseGI GGATG 2 cut(s) 447, 538
BseLI CCNNNNNNNGG 3 cut(s) 79, 144, 238
BseMI GCAATG 2 cut(s) 390, 436
BseMII CTCAG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 346
BseX3I CGGCCG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 122
BshFI GGCC 2 cut(s) 121, 190
BsiEI CGRYCG 1 cut(s) 122
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 3 cut(s) 79, 144, 238
BsmAI GTCTC 1 cut(s) 298
BsnI GGCC 2 cut(s) 121, 190
Bsp119I TTCGAA 1 cut(s) 65
Bsp143I GATC 2 cut(s) 106, 175
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 8 cut(s) 34, 36, 39, 77, 99, 369, 375, 384
BspANI GGCC 2 cut(s) 121, 190
BspCNI CTCAG 1 cut(s) 225
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 108
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 2 cut(s) 101, 114
BspT104I TTCGAA 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 99
BsrDI GCAATG 2 cut(s) 390, 436
BssECI CCNNGG 4 cut(s) 34, 138, 354, 416
BssMI GATC 2 cut(s) 106, 175
BssT1I CCWWGG 2 cut(s) 354, 416
Bst2UI CCWGG 2 cut(s) 139, 302
Bst4CI ACNGT 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 212, 229
BstDEI CTNAG 3 cut(s) 131, 233, 315
BstDSI CCRYGG 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 447, 538
BstFNI CGCG 1 cut(s) 36
BstH2I RGCGCY 2 cut(s) 73, 138
BstHHI GCGC 2 cut(s) 72, 137
BstKTI GATC 2 cut(s) 109, 178
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 2 cut(s) 106, 175
BstMCI CGRYCG 1 cut(s) 122
BstMWI GCNNNNNNNGC 3 cut(s) 127, 179, 381
BstNI CCWGG 2 cut(s) 139, 302
BstNSI RCATGY 1 cut(s) 214
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 3 cut(s) 72, 137, 300
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 119
BsuRI GGCC 2 cut(s) 121, 190
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 447, 538
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 212, 229
CfoI GCGC 2 cut(s) 72, 137
Cfr42I CCGCGG 1 cut(s) 37
CsiI ACCWGGT 1 cut(s) 300
CviAII CATG 2 cut(s) 211, 328
DdeI CTNAG 3 cut(s) 131, 233, 315
DpnI GATC 2 cut(s) 108, 177
DpnII GATC 2 cut(s) 106, 175
EaeI YGGCCR 2 cut(s) 119, 188
EagI CGGCCG 1 cut(s) 119
EclXI CGGCCG 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 354, 416
Eco52I CGGCCG 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 409
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 137, 300
EcoT14I CCWWGG 2 cut(s) 354, 416
ErhI CCWWGG 2 cut(s) 354, 416
FaeI CATG 2 cut(s) 214, 331
FaiI YATR 5 cut(s) 212, 329, 453, 540, 589
FatI CATG 2 cut(s) 210, 327
Fnu4HI GCNGC 3 cut(s) 37, 40, 351
FokI GGATG 2 cut(s) 454, 545
Fsp4HI GCNGC 3 cut(s) 37, 40, 351
FspBI CTAG 2 cut(s) 14, 543
GlaI GCGC 2 cut(s) 71, 136
GluI GCNGC 3 cut(s) 37, 40, 351
HaeII RGCGCY 2 cut(s) 73, 138
HaeIII GGCC 2 cut(s) 121, 190
HapII CCGG 1 cut(s) 73
HhaI GCGC 2 cut(s) 72, 137
Hin1II CATG 2 cut(s) 214, 331
Hin6I GCGC 2 cut(s) 70, 135
HinP1I GCGC 2 cut(s) 70, 135
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HpaI GTTAAC 1 cut(s) 565
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 2 cut(s) 111, 276
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 3 cut(s) 44, 468, 520
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 173, 214
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 179, 381
HpyF3I CTNAG 3 cut(s) 131, 233, 315
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 2 cut(s) 214, 331
HspAI GCGC 2 cut(s) 70, 135
KspAI GTTAAC 1 cut(s) 565
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 2 cut(s) 106, 175
LmnI GCTCC 2 cut(s) 262, 420
LpnPI CCDG 9 cut(s) 28, 86, 124, 151, 200, 245, 287, 314, 535
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 511
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 2 cut(s) 14, 543
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 362, 386
MalI GATC 2 cut(s) 108, 177
MbiI CCGCTC 1 cut(s) 99
MboI GATC 2 cut(s) 106, 175
MboII GAAGA 4 cut(s) 353, 478, 521, 549
MflI RGATCY 1 cut(s) 106
MluCI AATT 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 439, 559
MnlI CCTC 4 cut(s) 232, 324, 478, 499
MseI TTAA 4 cut(s) 93, 222, 309, 564
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 3 cut(s) 74, 139, 302
MvaI CCWGG 2 cut(s) 139, 302
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 3 cut(s) 127, 179, 381
NciI CCSGG 1 cut(s) 74
NdeII GATC 2 cut(s) 106, 175
NlaIII CATG 2 cut(s) 214, 331
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 97
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 65
PaeI GCATGC 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 38, 41, 352
PshAI GACNNNNGTC 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 137, 300
PspGI CCWGG 2 cut(s) 137, 300
PspN4I GGNNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 215
SacII CCGCGG 1 cut(s) 37
SaqAI TTAA 4 cut(s) 93, 222, 309, 564
SatI GCNGC 3 cut(s) 37, 40, 351
Sau3AI GATC 2 cut(s) 106, 175
ScrFI CCNGG 3 cut(s) 74, 139, 302
SetI ASST 9 cut(s) 9, 55, 64, 219, 243, 306, 360, 425, 531
SexAI ACCWGGT 1 cut(s) 300
SfaNI GCATC 1 cut(s) 511
Sfr303I CCGCGG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 65
SgrBI CCGCGG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 215
SphI GCATGC 1 cut(s) 214
Sse9I AATT 1 cut(s) 267
SsiI CCGC 8 cut(s) 34, 36, 39, 77, 99, 369, 375, 384
SspMI CTAG 2 cut(s) 14, 543
StyD4I CCNGG 3 cut(s) 72, 137, 300
StyI CCWWGG 2 cut(s) 354, 416
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 9
TaqI TCGA 3 cut(s) 65, 497, 519
TasI AATT 1 cut(s) 267
TauI GCSGC 2 cut(s) 39, 42
Tru1I TTAA 4 cut(s) 93, 222, 309, 564
Tru9I TTAA 4 cut(s) 93, 222, 309, 564
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 277, 528
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 1 cut(s) 267
XbaI TCTAGA 1 cut(s) 13
XceI RCATGY 1 cut(s) 214
XspI CTAG 2 cut(s) 14, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.