Rh6AG051200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000667
Physical Location & Seq
Reverse (-)
7354675 .. 7355616
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG051200.1

Sequence Viewer

Length: 546 bp
ATGAGGACTAGTGCTAGCAAAGCAAAGAAGCAGCAGAATTTGTTAATGCGCTTTATTTCTTTACCCTTTCGAACTTTAGCCAAGGCCAGGAACTTCTACATGAGGGGTTTGGAAGATTGCGCCGGTAAGGTGGGTGGCGGCGGCGGTGTTGGCGGTTACGCTGCTTCGCAGGTTCACTTGCCGAGGAGCTTTAGTGTCAACTCTTTGGGTTCAAACGACGACGAGGATGTGAGGCAGCTTATCAGAACTGCGTCGTCAAAGAAGAACAATGCAGGGAAAGAGAACAAGGACGACAATATTAGGACAGCAGCTAGTTCAGATGTGAATAGAAGTAGTGTTAGACCAATTGTTGGTGTTAGACAAGCTGCGAATGGTACGAACAATGGGAGAGGGGTGAGGAGCTATAGTGTTGGGTTGAAGATGGGGAGGATTGATGAGGAAAGGGCTTGTACTTTTGAGGAAGATGAAGTCGATGTCAAGGCAGATGTGTATACAAGGAGCAGAAGCTATGCTGTTAATTATAAGAGAAATGCTGGGTTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.73

Weight (kDa)

10.0

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
Acc36I ACCTGC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 350
AccI GTMKAC 1 cut(s) 491
AciI CCGC 4 cut(s) 138, 141, 144, 153
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 2 cut(s) 376, 451
AfiI CCNNNNNNNGG 2 cut(s) 87, 350
AgsI TTSAA 2 cut(s) 213, 418
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 6 cut(s) 189, 238, 311, 365, 402, 507
AluI AGCT 6 cut(s) 189, 238, 311, 365, 402, 507
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 5 cut(s) 31, 161, 235, 308, 365
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 2 cut(s) 51, 122
AsuHPI GGTGA 1 cut(s) 406
AsuII TTCGAA 1 cut(s) 70
AsuNHI GCTAGC 1 cut(s) 14
BbvI GCAGC 5 cut(s) 43, 148, 247, 320, 352
BccI CCATC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 3 cut(s) 9, 15, 312
BfmI CTRYAG 1 cut(s) 403
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 7 cut(s) 32, 139, 142, 162, 236, 309, 366
BlsI GCNGC 7 cut(s) 33, 140, 143, 163, 237, 310, 367
Bme1390I CCNGG 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 81, 182
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 391, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 350
Bse118I RCCGGY 1 cut(s) 122
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 81, 182
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 87, 350
BseRI GAGGAG 2 cut(s) 199, 412
BseXI GCAGC 5 cut(s) 43, 148, 247, 320, 352
BseYI CCCAGC 1 cut(s) 533
BshFI GGCC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 87, 350
BsnI GGCC 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 70
BspACI CCGC 4 cut(s) 138, 141, 144, 153
BspANI GGCC 1 cut(s) 86
BspMI ACCTGC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 81, 182
BssNAI GTATAC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 81
Bst1107I GTATAC 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 232
BstHHI GCGC 2 cut(s) 51, 122
BstMWI GCNNNNNNNGC 3 cut(s) 20, 150, 539
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 403
BstV1I GCAGC 5 cut(s) 43, 148, 247, 320, 352
BstZ17I GTATAC 1 cut(s) 492
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 2 cut(s) 51, 122
Cfr10I RCCGGY 1 cut(s) 122
CseI GACGC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 375, 450
CviAII CATG 1 cut(s) 100
CviJI RGCY 9 cut(s) 80, 86, 189, 238, 311, 365, 402, 446, 507
CviKI_1 RGCY 9 cut(s) 80, 86, 189, 238, 311, 365, 402, 446, 507
CviQI GTAC 2 cut(s) 375, 450
Eco130I CCWWGG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 103
FaiI YATR 6 cut(s) 101, 405, 492, 510, 522, 544
FatI CATG 1 cut(s) 99
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 7 cut(s) 32, 139, 142, 162, 236, 309, 366
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 7 cut(s) 32, 139, 142, 162, 236, 309, 366
FspBI CTAG 3 cut(s) 9, 15, 312
GlaI GCGC 2 cut(s) 50, 121
GluI GCNGC 7 cut(s) 32, 139, 142, 162, 236, 309, 366
GsaI CCCAGC 1 cut(s) 537
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 240
HhaI GCGC 2 cut(s) 51, 122
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 2 cut(s) 49, 120
HinP1I GCGC 2 cut(s) 49, 120
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 3 cut(s) 175, 199, 492
Hpy188I TCNGA 2 cut(s) 245, 319
Hpy8I GTNNAC 3 cut(s) 175, 199, 492
Hpy99I CGWCG 3 cut(s) 221, 224, 256
HpyCH4V TGCA 2 cut(s) 272, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 150, 539
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 2 cut(s) 49, 120
LmnI GCTCC 3 cut(s) 186, 399, 498
LpnPI CCDG 6 cut(s) 73, 100, 136, 155, 258, 519
Lsp1109I GCAGC 5 cut(s) 43, 148, 247, 320, 352
MaeI CTAG 3 cut(s) 9, 15, 312
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 4 cut(s) 125, 274, 430, 473
MfeI CAATTG 1 cut(s) 345
MluCI AATT 3 cut(s) 37, 345, 517
MnlI CCTC 9 cut(s) 96, 177, 217, 225, 383, 390, 420, 430, 451
MseI TTAA 2 cut(s) 44, 516
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 3 cut(s) 20, 150, 539
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 207
NspV TTCGAA 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 7 cut(s) 33, 140, 143, 163, 237, 310, 367
PsiI TTATAA 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 533
PspGI CCWGG 1 cut(s) 86
RsaI GTAC 2 cut(s) 376, 451
RsaNI GTAC 2 cut(s) 375, 450
SaqAI TTAA 2 cut(s) 44, 516
SatI GCNGC 7 cut(s) 32, 139, 142, 162, 236, 309, 366
ScrFI CCNGG 1 cut(s) 88
SetI ASST 8 cut(s) 132, 174, 191, 240, 313, 367, 404, 509
SfcI CTRYAG 1 cut(s) 403
SfuI TTCGAA 1 cut(s) 70
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 3 cut(s) 37, 345, 517
SsiI CCGC 4 cut(s) 138, 141, 144, 153
SspI AATATT 1 cut(s) 298
SspMI CTAG 3 cut(s) 9, 15, 312
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 2 cut(s) 70, 471
TasI AATT 3 cut(s) 37, 345, 517
TatI WGTACW 1 cut(s) 449
TauI GCSGC 2 cut(s) 141, 144
Tru1I TTAA 2 cut(s) 44, 516
Tru9I TTAA 2 cut(s) 44, 516
TseI GCWGC 5 cut(s) 31, 161, 235, 308, 365
TspDTI ATGAA 1 cut(s) 480
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 3 cut(s) 9, 15, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.