Prupe.1G420800_v2.0.a1

Uncharacterised conserved protein UCP031279 (InterPro IPR016972)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000667
Physical Location & Seq
Forward (+)
36368808 .. 36369846
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G420800.1

Sequence Viewer

Length: 507 bp
ATGAGAAGCACCAAAGAACAGAACAAAAACAAGTTCATGAGAATCATCACAGTACCCATCAGAGCTCTGAGCAAAGCCAAGGACTTTTATGTGAGAAGCATGACAGATGTGGCTGAGAGAGTGAGCTATGGCAACACCATGGGAGGCCCAGGTGGCCAGTTCTCTTCAAGCCTTCCCAAAAGCTTCAGCTCTAGGTCAACTTCTGGGTCGAGTGAAGCCAGTGGTGATGATTTTTCAGAGCTTATCAGAGCTGCCTCTGCCAGGAGCTATGGAACAAGGATTGATGTGGATGCAATATTGAAAGAGCAGCAGCTGAAGCGATCTGCTACAACCACCACCATGGGATCAAAAGCTGTGCTTCCCAAGTGTAGCAGCGTGGCCATGGGCAGGATTGATGAAGACGGGCCTGCTGATTTTGATGAACATGCTGCTGGTGATGTCAAGCCTGACTTGTTCTACCCAAGAAGCAGAAGCTATGCTGTTACAAAGAGAAGTGTTGCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.27

Weight (kDa)

9.64

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 352
AcoI YGGCCR 2 cut(s) 154, 378
AcuI CTGAAG 2 cut(s) 169, 335
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 261, 387
AgsI TTSAA 2 cut(s) 168, 301
AjnI CCWGG 2 cut(s) 148, 260
Alw21I GWGCWC 1 cut(s) 67
AlwI GGATC 1 cut(s) 352
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 4 cut(s) 145, 154, 378, 404
ApeKI GCWGC 5 cut(s) 251, 307, 310, 372, 428
AspS9I GGNCC 2 cut(s) 146, 404
AsuHPI GGTGA 2 cut(s) 236, 446
BalI TGGCCA 2 cut(s) 156, 380
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 5 cut(s) 238, 319, 322, 384, 415
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 2 cut(s) 150, 262
BfaI CTAG 1 cut(s) 192
BglI GCCNNNNNGGC 1 cut(s) 153
BisI GCNGC 5 cut(s) 252, 308, 311, 373, 429
BlsI GCNGC 5 cut(s) 253, 309, 312, 374, 430
Bme1390I CCNGG 2 cut(s) 150, 262
BmgT120I GGNCC 2 cut(s) 146, 404
BmrFI CCNGG 2 cut(s) 150, 262
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 405
BsaJI CCNNGG 5 cut(s) 78, 138, 148, 339, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 387
Bse1I ACTGG 2 cut(s) 157, 219
BseBI CCWGG 2 cut(s) 150, 262
BseDI CCNNGG 5 cut(s) 78, 138, 148, 339, 381
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 2 cut(s) 261, 387
BseMII CTCAG 2 cut(s) 59, 105
BseNI ACTGG 2 cut(s) 157, 219
BseXI GCAGC 5 cut(s) 238, 319, 322, 384, 415
BshFI GGCC 4 cut(s) 147, 156, 380, 406
BsiHKAI GWGCWC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 261, 387
BsnI GGCC 4 cut(s) 147, 156, 380, 406
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 320, 344
Bsp19I CCATGG 3 cut(s) 138, 339, 381
BspANI GGCC 4 cut(s) 147, 156, 380, 406
BspCNI CTCAG 2 cut(s) 60, 106
BspHI TCATGA 1 cut(s) 36
BspPI GGATC 1 cut(s) 352
BsrI ACTGG 2 cut(s) 157, 219
BssECI CCNNGG 5 cut(s) 78, 138, 148, 339, 381
BssMI GATC 2 cut(s) 320, 344
BssT1I CCWWGG 4 cut(s) 78, 138, 339, 381
Bst2UI CCWGG 2 cut(s) 150, 262
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 68, 114
BstDSI CCRYGG 3 cut(s) 138, 339, 381
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 2 cut(s) 323, 347
BstMBI GATC 2 cut(s) 320, 344
BstMWI GCNNNNNNNGC 3 cut(s) 153, 257, 316
BstNI CCWGG 2 cut(s) 150, 262
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 2 cut(s) 148, 260
BstV1I GCAGC 5 cut(s) 238, 319, 322, 384, 415
BstV2I GAAGAC 1 cut(s) 405
BstXI CCANNNNNNTGG 1 cut(s) 340
BsuRI GGCC 4 cut(s) 147, 156, 380, 406
BtgI CCRYGG 3 cut(s) 138, 339, 381
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 408
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 146, 404
Csp6I GTAC 1 cut(s) 53
CviAII CATG 6 cut(s) 37, 100, 139, 340, 382, 425
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 68, 114
DpnI GATC 2 cut(s) 322, 346
DpnII GATC 2 cut(s) 320, 344
EaeI YGGCCR 2 cut(s) 154, 378
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 65
Eco130I CCWWGG 4 cut(s) 78, 138, 339, 381
Eco24I GRGCYC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 169, 335
EcoICRI GAGCTC 1 cut(s) 65
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoRII CCWGG 2 cut(s) 148, 260
EcoT14I CCWWGG 4 cut(s) 78, 138, 339, 381
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 4 cut(s) 78, 138, 339, 381
FaeI CATG 6 cut(s) 40, 103, 142, 343, 385, 428
FalI AAGNNNNNCTT 5 cut(s) 342, 374, 434, 466, 484
FatI CATG 6 cut(s) 36, 99, 138, 339, 381, 424
Fnu4HI GCNGC 5 cut(s) 252, 308, 311, 373, 429
FokI GGATG 1 cut(s) 302
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 5 cut(s) 252, 308, 311, 373, 429
FspBI CTAG 1 cut(s) 192
GluI GCNGC 5 cut(s) 252, 308, 311, 373, 429
HaeIII GGCC 4 cut(s) 147, 156, 380, 406
Hin1II CATG 6 cut(s) 40, 103, 142, 343, 385, 428
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 1 cut(s) 42
HphI GGTGA 2 cut(s) 236, 446
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 5 cut(s) 62, 69, 238, 248, 506
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 257, 316
HpyF3I CTNAG 2 cut(s) 68, 114
Hsp92II CATG 6 cut(s) 40, 103, 142, 343, 385, 428
Kzo9I GATC 2 cut(s) 320, 344
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 5 cut(s) 238, 319, 322, 384, 415
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 481
MalI GATC 2 cut(s) 322, 346
MboI GATC 2 cut(s) 320, 344
MboII GAAGA 2 cut(s) 156, 410
MhlI GDGCHC 1 cut(s) 67
MlsI TGGCCA 2 cut(s) 156, 380
MluNI TGGCCA 2 cut(s) 156, 380
MnlI CCTC 2 cut(s) 137, 265
Mox20I TGGCCA 2 cut(s) 156, 380
MscI TGGCCA 2 cut(s) 156, 380
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 2 cut(s) 156, 380
MspA1I CMGCKG 1 cut(s) 313
MspR9I CCNGG 2 cut(s) 150, 262
MvaI CCWGG 2 cut(s) 150, 262
MwoI GCNNNNNNNGC 3 cut(s) 153, 257, 316
NcoI CCATGG 3 cut(s) 138, 339, 381
NdeII GATC 2 cut(s) 320, 344
NlaIII CATG 6 cut(s) 40, 103, 142, 343, 385, 428
NspI RCATGY 1 cut(s) 428
PagI TCATGA 1 cut(s) 36
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 5 cut(s) 253, 309, 312, 374, 430
Psp124BI GAGCTC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 148, 260
PspGI CCWGG 2 cut(s) 148, 260
PspPI GGNCC 2 cut(s) 146, 404
PstNI CAGNNNCTG 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 338
SacI GAGCTC 1 cut(s) 67
SatI GCNGC 5 cut(s) 252, 308, 311, 373, 429
Sau3AI GATC 2 cut(s) 320, 344
Sau96I GGNCC 2 cut(s) 146, 404
ScrFI CCNGG 2 cut(s) 150, 262
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 1 cut(s) 280
SfiI GGCCNNNNNGGCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 338
SspI AATATT 1 cut(s) 297
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 148, 260
StyI CCWWGG 4 cut(s) 78, 138, 339, 381
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 209
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 1 cut(s) 226
TseI GCWGC 5 cut(s) 251, 307, 310, 372, 428
TspDTI ATGAA 3 cut(s) 25, 411, 435
TspRI CASTG 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 259
XceI RCATGY 1 cut(s) 428
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.