Rorug05G0533600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000667
Physical Location & Seq
Forward (+)
72165530 .. 72166692
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0533600.1

Sequence Viewer

Length: 1062 bp
ATGGCGGTGGATGAAGAACACACCCAGAAGCCGCACGTAGCGATGCTATCAAGTCCCGGAGTGGGTCACGTGACCCCTCTCCTCGAGCTAGCCAAACGGCTGGTCGTCGACCTCAGCTTCCTTGCAATCACCACCGATGCACCACCCGCGCAGCTTCAGCTGCTCAACAACAACCCCACCCTCCCTTCCGATCTCCACGTCATCCACCTCCCTCATGTTAATGTGTCAAGCAACGACGTCATAGCAATTCAGATCATTCAAATTGTCCGAGAGAGCCTTCGTTCACTGCCCTCGGTGCTAACCAACTTACACTCTCATAAACCGCCGCTAACAGCTCTGATCGTCGATCCGTTTTGCATCCAAGCCCTCGAAACCGCCGCCGACCACTCTATCCCAACGTATCTTTTCTTGACCGCCTCCGCTTCATTTCTGGCGTTGACCATCTACTTCCCTACGCTTCATGCAGATGTCAAGGGAGACTATGGTAAAATAAAAGAGAGTGTTTTTCTTCCAGGTTGCATGCCCTTGTGGGTTGACGATCTTCTCCCTGATGTTCTGAAACCTTTCTTTGTCAATCTGCCGACGCCGACAATTCATCCCATCGGACCCCTAACCAAAGACAAAGACGCTGACGTAGAATCGGAGCTGCTCAAGTGGCTGGACAAGCAGCCGTGTGACTCGGTTGTTTACGTGTCATTCGGCAGCGGAGGGACGTTGTCGGCGGAGCAGATGACTGAGTTGGCTCATGGGTTGGAGCTGAGTGGAAAACGATTCCTCTGGGTGGCAAGACCTCCCAGAGCCGATGATGCTTCGGGAAGCTTCTTCGAAGCTGGTGTTGATGGTCCCCTTACGGCGTCGTATCTGCCGGATGGGTTTTCGGAGAGGACACGAGGGGCAGGGCTGGTGACGGCCCCGCAAGTGGCGGTGTTGAGCCACCCCTCGGTGTGTGGGTTTGTGACGCACTGCGGGTGGAACTCGGTGATGGAGAGCGTGGTGTACGGGGTGGTGATGGTGGCTTGGCCGCTTTATGCAGAGCAGAAGATGAATGCGAGGCATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

38.39

Weight (kDa)

5.43

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 199 - 352 8.1e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 149
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 1019
AcuI CTGAAG 1 cut(s) 140
AcvI CACGTG 1 cut(s) 70
AcyI GRCGYC 3 cut(s) 237, 584, 854
AfaI GTAC 1 cut(s) 998
AfiI CCNNNNNNNGG 4 cut(s) 62, 781, 919, 940
AflIII ACRYGT 1 cut(s) 690
AgsI TTSAA 1 cut(s) 260
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 9 cut(s) 88, 117, 154, 160, 335, 646, 757, 819, 830
AluI AGCT 9 cut(s) 88, 117, 154, 160, 335, 646, 757, 819, 830
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 2 cut(s) 909, 1019
ApeKI GCWGC 5 cut(s) 151, 160, 646, 667, 702
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
Asp700I GAANNNNTTC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 605, 842, 910
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 4 cut(s) 121, 916, 991, 1018
AsuII TTCGAA 1 cut(s) 825
AsuNHI GCTAGC 1 cut(s) 88
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 605, 842
BauI CACGAG 1 cut(s) 888
BbrPI CACGTG 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 113
BbvI GCAGC 5 cut(s) 147, 163, 633, 679, 714
BccI CCATC 6 cut(s) 449, 608, 833, 863, 976, 1003
BceAI ACGGC 4 cut(s) 113, 655, 867, 924
BciT130I CCWGG 1 cut(s) 513
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 1 cut(s) 89
BisI GCNGC 9 cut(s) 32, 152, 161, 326, 378, 647, 668, 703, 1022
BlsI GCNGC 9 cut(s) 33, 153, 162, 327, 379, 648, 669, 704, 1023
Bme1390I CCNGG 2 cut(s) 57, 513
Bme18I GGWCC 2 cut(s) 605, 842
BmeT110I CYCGRG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 605, 842, 910
BmiI GGNNCC 3 cut(s) 607, 844, 912
BmrFI CCNGG 2 cut(s) 57, 513
BmsI GCATC 4 cut(s) 33, 127, 366, 796
BmtI GCTAGC 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 825
BpuEI CTTGAG 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 57
BsaAI YACGTR 3 cut(s) 37, 70, 691
BsaHI GRCGYC 3 cut(s) 237, 584, 854
BsaJI CCNNGG 2 cut(s) 291, 939
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 781, 919, 940
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 2 cut(s) 291, 939
BseGI GGATG 5 cut(s) 16, 201, 357, 595, 874
BseLI CCNNNNNNNGG 4 cut(s) 62, 781, 919, 940
BseMII CTCAG 3 cut(s) 127, 726, 749
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 5 cut(s) 147, 163, 633, 679, 714
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 911, 1021
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 57, 866
BslFI GGGAC 3 cut(s) 39, 724, 828
BslI CCNNNNNNNGG 4 cut(s) 62, 781, 919, 940
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 3 cut(s) 39, 724, 828
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 2 cut(s) 911, 1021
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 825
Bsp143I GATC 5 cut(s) 190, 252, 339, 346, 538
BspANI GGCC 2 cut(s) 911, 1021
BspCNI CTCAG 3 cut(s) 126, 727, 750
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 607, 844, 912
BspOI GCTAGC 1 cut(s) 92
BspPI GGATC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 825
BssECI CCNNGG 2 cut(s) 291, 939
BssMI GATC 5 cut(s) 190, 252, 339, 346, 538
BssNI GRCGYC 3 cut(s) 237, 584, 854
BssSI CACGAG 1 cut(s) 888
Bst2BI CACGAG 1 cut(s) 888
Bst2UI CCWGG 1 cut(s) 513
BstACI GRCGYC 3 cut(s) 237, 584, 854
BstBAI YACGTR 3 cut(s) 37, 70, 691
BstBI TTCGAA 1 cut(s) 825
BstC8I GCNNGC 2 cut(s) 90, 521
BstDEI CTNAG 3 cut(s) 113, 735, 758
BstF5I GGATG 5 cut(s) 16, 201, 357, 595, 874
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 5 cut(s) 193, 255, 342, 349, 541
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 5 cut(s) 190, 252, 339, 346, 538
BstMWI GCNNNNNNNGC 7 cut(s) 146, 157, 160, 295, 655, 664, 806
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 2 cut(s) 55, 511
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 5 cut(s) 147, 163, 633, 679, 714
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 911, 1021
BtgZI GCGATG 1 cut(s) 56
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 5 cut(s) 16, 201, 357, 595, 874
BtsI GCAGTG 2 cut(s) 284, 961
BtsIMutI CAGTG 2 cut(s) 284, 961
Cac8I GCNNGC 2 cut(s) 90, 521
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 605, 842, 910
CseI GACGC 4 cut(s) 592, 635, 843, 967
Csp6I GTAC 1 cut(s) 997
CviAII CATG 4 cut(s) 215, 461, 520, 746
CviQI GTAC 1 cut(s) 997
DdeI CTNAG 3 cut(s) 113, 735, 758
DpnI GATC 5 cut(s) 192, 254, 341, 348, 540
DpnII GATC 5 cut(s) 190, 252, 339, 346, 538
EaeI YGGCCR 1 cut(s) 1019
EciI GGCGGA 1 cut(s) 737
Eco47I GGWCC 2 cut(s) 605, 842
Eco57I CTGAAG 1 cut(s) 140
Eco72I CACGTG 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 511
FaeI CATG 4 cut(s) 218, 464, 523, 749
FaiI YATR 8 cut(s) 216, 242, 318, 462, 483, 521, 747, 1029
FaqI GGGAC 3 cut(s) 39, 724, 828
FatI CATG 4 cut(s) 214, 460, 519, 745
FauI CCCGC 3 cut(s) 154, 921, 959
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 9 cut(s) 32, 152, 161, 326, 378, 647, 668, 703, 1022
FokI GGATG 5 cut(s) 23, 188, 344, 582, 881
Fsp4HI GCNGC 9 cut(s) 32, 152, 161, 326, 378, 647, 668, 703, 1022
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 150
GluI GCNGC 9 cut(s) 32, 152, 161, 326, 378, 647, 668, 703, 1022
HaeIII GGCC 2 cut(s) 911, 1021
HapII CCGG 2 cut(s) 57, 866
HgaI GACGC 4 cut(s) 592, 635, 843, 967
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 3 cut(s) 237, 584, 854
Hin1II CATG 4 cut(s) 218, 464, 523, 749
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 3 cut(s) 109, 438, 535
HindII GTYRAC 3 cut(s) 109, 438, 535
HindIII AAGCTT 1 cut(s) 817
HinfI GANTC 3 cut(s) 638, 677, 771
HpaII CCGG 2 cut(s) 57, 866
HphI GGTGA 4 cut(s) 121, 916, 991, 1018
Hpy166II GTNNAC 6 cut(s) 109, 284, 438, 535, 688, 997
Hpy188I TCNGA 8 cut(s) 190, 252, 269, 339, 558, 605, 643, 880
Hpy188III TCNNGA 2 cut(s) 409, 813
Hpy8I GTNNAC 6 cut(s) 109, 284, 438, 535, 688, 997
Hpy99I CGWCG 5 cut(s) 110, 239, 347, 586, 859
HpyAV CCTTC 2 cut(s) 195, 287
HpyCH4IV ACGT 8 cut(s) 36, 69, 198, 237, 398, 633, 690, 713
HpyCH4V TGCA 6 cut(s) 125, 140, 357, 464, 519, 1031
HpyF10VI GCNNNNNNNGC 7 cut(s) 146, 157, 160, 295, 655, 664, 806
HpyF3I CTNAG 3 cut(s) 113, 735, 758
HpySE526I ACGT 8 cut(s) 36, 69, 198, 237, 398, 633, 690, 713
Hsp92I GRCGYC 3 cut(s) 237, 584, 854
Hsp92II CATG 4 cut(s) 218, 464, 523, 749
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 5 cut(s) 190, 252, 339, 346, 538
LmnI GCTCC 3 cut(s) 643, 724, 754
Lsp1109I GCAGC 5 cut(s) 147, 163, 633, 679, 714
LweI GCATC 4 cut(s) 33, 127, 366, 796
MaeI CTAG 1 cut(s) 89
MaeII ACGT 8 cut(s) 36, 69, 198, 237, 398, 633, 690, 713
MaeIII GTNAC 5 cut(s) 65, 70, 674, 904, 955
MalI GATC 5 cut(s) 192, 254, 341, 348, 540
MboI GATC 5 cut(s) 190, 252, 339, 346, 538
MboII GAAGA 5 cut(s) 26, 500, 533, 814, 1051
MluCI AATT 3 cut(s) 246, 261, 591
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 1 cut(s) 732
MroXI GAANNNNTTC 1 cut(s) 563
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 219, 465
MspA1I CMGCKG 2 cut(s) 160, 705
MspI CCGG 2 cut(s) 57, 866
MspR9I CCNGG 2 cut(s) 57, 513
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 1 cut(s) 513
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 7 cut(s) 146, 157, 160, 295, 655, 664, 806
NciI CCSGG 1 cut(s) 57
NdeII GATC 5 cut(s) 190, 252, 339, 346, 538
NheI GCTAGC 1 cut(s) 88
NlaIII CATG 4 cut(s) 218, 464, 523, 749
NlaIV GGNNCC 3 cut(s) 607, 844, 912
NmuCI GTSAC 5 cut(s) 65, 70, 674, 904, 955
NspI RCATGY 1 cut(s) 523
NspV TTCGAA 1 cut(s) 825
PaeI GCATGC 1 cut(s) 523
PaeR7I CTCGAG 1 cut(s) 83
PctI GAATGC 1 cut(s) 1051
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 2 cut(s) 638, 771
PflFI GACNNNGTC 1 cut(s) 715
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 9 cut(s) 33, 153, 162, 327, 379, 648, 669, 704, 1023
PleI GAGTC 1 cut(s) 671
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
PpsI GAGTC 1 cut(s) 671
Ppu21I YACGTR 3 cut(s) 37, 70, 691
Psp6I CCWGG 1 cut(s) 511
PspCI CACGTG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 3 cut(s) 607, 844, 912
PspPI GGNCC 3 cut(s) 605, 842, 910
PspXI VCTCGAGB 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 160
RsaI GTAC 1 cut(s) 998
RsaNI GTAC 1 cut(s) 997
RseI CAYNNNNRTG 2 cut(s) 219, 465
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 9 cut(s) 32, 152, 161, 326, 378, 647, 668, 703, 1022
Sau3AI GATC 5 cut(s) 190, 252, 339, 346, 538
Sau96I GGNCC 3 cut(s) 605, 842, 910
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 2 cut(s) 57, 513
SfaNI GCATC 4 cut(s) 33, 127, 366, 796
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 825
SinI GGWCC 2 cut(s) 605, 842
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 219, 465
SmlI CTYRAG 2 cut(s) 83, 650
SmoI CTYRAG 2 cut(s) 83, 650
SphI GCATGC 1 cut(s) 523
Sse9I AATT 3 cut(s) 246, 261, 591
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 55, 511
TaiI ACGT 8 cut(s) 39, 72, 201, 240, 401, 636, 693, 716
TaqI TCGA 5 cut(s) 84, 108, 345, 369, 825
TasI AATT 3 cut(s) 246, 261, 591
TauI GCSGC 4 cut(s) 34, 328, 380, 1024
TfiI GAWTC 2 cut(s) 638, 771
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 291, 968
TseFI GTSAC 5 cut(s) 65, 70, 674, 904, 955
TseI GCWGC 5 cut(s) 151, 160, 646, 667, 702
Tsp45I GTSAC 5 cut(s) 65, 70, 674, 904, 955
TspDTI ATGAA 5 cut(s) 27, 414, 449, 584, 1058
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 2 cut(s) 291, 968
Tth111I GACNNNGTC 1 cut(s) 715
VpaK11BI GGWCC 2 cut(s) 605, 842
XceI RCATGY 1 cut(s) 523
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.