Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Reverse (-)

10454932 .. 10456191

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGAGCAACGCAAGCAAGAGTAGCAAAGGCAGCAGATTCAGCAGGTTCATGAAGGCGCCGATAAGGGTTTTGATTAAGGCGAGGGATTTCTACATCAAGAGCATGACCGAGTGCTCCACTCGATTCGACTACGGTGGCATGGCCATGGGGTGCCCTACTGCCCAAGTCCCAAGTGCTTTGCCAAGAAGCTTCAGCACCAGCTCCGTCAAGTCGTCAAGCAGCAGCAGCAACAATGATGATTACAGAGAGCTCTTGAGGGCTGCTTCTGCTAGGAGCACTTTCGCTTATAACCAAAAAATGGAGGATCTTGGAAGAAAGCAGCAGATCAACAGTACCGGAGCTGATAATGCGATGATGATGAATCGTAGTCGTAGCGTTGGGATTGGAAGGATTGATGAAGACAAGGCTTGCGAATTTGGTGAAGAAGATGTCAAGGTCAACAAGAATATGTATCCCAGAAGCAGAAGCTCTGCTATTGCTAGGAGAACAACGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

167

Amino Acids

18.43

Weight (kDa)

10.01

Isoelectric Point (pI)

67.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	36
AccB1I	GGYRCC	2 cut(s)	58, 153
AccB7I	CCANNNNNTGG	1 cut(s)	301
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	301
AluBI	AGCT	5 cut(s)	192, 204, 253, 344, 471
AluI	AGCT	5 cut(s)	192, 204, 253, 344, 471
Alw21I	GWGCWC	3 cut(s)	119, 255, 281
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	6 cut(s)	33, 222, 225, 228, 263, 322
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	2 cut(s)	58, 153
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	3 cut(s)	119, 255, 281
BbvI	GCAGC	6 cut(s)	45, 234, 237, 240, 250, 334
BciVI	GTATCC	1 cut(s)	465
BfaI	CTAG	2 cut(s)	273, 483
BfoI	RGCGCY	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	36
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	6 cut(s)	34, 223, 226, 229, 264, 323
BlsI	GCNGC	6 cut(s)	35, 224, 227, 230, 265, 324
BmiI	GGNNCC	2 cut(s)	60, 155
BpiI	GAAGAC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	6 cut(s)	45, 234, 237, 240, 250, 334
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	2 cut(s)	58, 153
BsiHKAI	GWGCWC	3 cut(s)	119, 255, 281
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	4 cut(s)	119, 158, 255, 281
Bsp143I	GATC	2 cut(s)	307, 327
Bsp19I	CCATGG	1 cut(s)	147
BspANI	GGCC	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	60, 155
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	2 cut(s)	58, 153
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	307, 327
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	137, 335
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	16, 412
BstDSI	CCRYGG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	310, 330
BstMBI	GATC	2 cut(s)	307, 327
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 24, 33, 42, 228, 269, 350
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	6 cut(s)	45, 234, 237, 240, 250, 334
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	368
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	16, 412
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	4 cut(s)	52, 106, 142, 148
CviJI	RGCY	8 cut(s)	146, 192, 204, 253, 263, 344, 410, 471
CviKI_1	RGCY	8 cut(s)	146, 192, 204, 253, 263, 344, 410, 471
CviQI	GTAC	1 cut(s)	336
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	2 cut(s)	309, 329
DpnII	GATC	2 cut(s)	307, 327
EaeI	YGGCCR	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	255
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	255
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	55, 109, 145, 151
FaiI	YATR	7 cut(s)	53, 107, 143, 149, 291, 452, 499
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	51, 105, 141, 147
Fnu4HI	GCNGC	6 cut(s)	34, 223, 226, 229, 264, 323
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	6 cut(s)	34, 223, 226, 229, 264, 323
FspBI	CTAG	2 cut(s)	273, 483
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	6 cut(s)	34, 223, 226, 229, 264, 323
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	55, 109, 145, 151
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	3 cut(s)	39, 126, 364
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188III	TCNNGA	3 cut(s)	52, 100, 256
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	2 cut(s)	49, 384
HpyCH4III	ACNGT	2 cut(s)	137, 335
HpyCH4IV	ACGT	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 24, 33, 42, 228, 269, 350
HpySE526I	ACGT	1 cut(s)	494
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	55, 109, 145, 151
HspAI	GCGC	1 cut(s)	59
KasI	GGCGCC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	307, 327
LmnI	GCTCC	4 cut(s)	122, 209, 276, 341
LpnPI	CCDG	4 cut(s)	31, 214, 352, 472
Lsp1109I	GCAGC	6 cut(s)	45, 234, 237, 240, 250, 334
MaeI	CTAG	2 cut(s)	273, 483
MaeII	ACGT	1 cut(s)	494
MalI	GATC	2 cut(s)	309, 329
MboI	GATC	2 cut(s)	307, 327
MboII	GAAGA	4 cut(s)	327, 413, 437, 440
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	4 cut(s)	119, 158, 255, 281
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	1 cut(s)	416
MluNI	TGGCCA	1 cut(s)	146
Mly113I	GGCGCC	1 cut(s)	59
MnlI	CCTC	3 cut(s)	78, 252, 298
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	7 cut(s)	15, 24, 33, 42, 228, 269, 350
NarI	GGCGCC	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	307, 327
NlaIII	CATG	4 cut(s)	55, 109, 145, 151
NlaIV	GGNNCC	2 cut(s)	60, 155
PagI	TCATGA	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	39, 126, 364
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	6 cut(s)	35, 224, 227, 230, 265, 324
PluTI	GGCGCC	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	60, 155
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	146
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	6 cut(s)	34, 223, 226, 229, 264, 323
Sau3AI	GATC	2 cut(s)	307, 327
SduI	GDGCHC	4 cut(s)	119, 158, 255, 281
SetI	ASST	8 cut(s)	50, 194, 206, 255, 346, 441, 473, 497
SfoI	GGCGCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	1 cut(s)	416
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	2 cut(s)	273, 483
SstI	GAGCTC	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	137, 335
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	2 cut(s)	124, 129
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	416
TfiI	GAWTC	3 cut(s)	39, 126, 364
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	6 cut(s)	33, 222, 225, 228, 263, 322
TspDTI	ATGAA	4 cut(s)	40, 68, 377, 414
TspGWI	ACGGA	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	416
XspI	CTAG	2 cut(s)	273, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.