Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Forward (+)

72779463 .. 72779900

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAGGCGCCTATAAGAGTTTTGATTAAGGCGAGGGATTTCTACATCAAGAGCATGACCGAGTGCTCCACTCGATTCGACTATGGTGGCATGGCCATGGGCTGCCCTACTGCCCAAGTCCCAAGTGCTTTGCCAAGAAGCTTCAGCACCAGCTCCGTCAAGTCGTCAAGCAGCAGCAACAATGATGATTACAGAGAGCTCATGAGGGCTGCTTCTGCTAGAAGCACTTTCGCCTATAACAAAAATATGGAGGATCTTGGGAGAAAGCAGCAGATCAATAGTACCGGAGCCAATAATGCGATGATGAATCGTAGTCGCAGCGTTGGAATTGGAAGGATTGATGAAGACAAGGCTTGCGAATTTGGTGAAGAAGATGTCAACAAGAATATGTATCCAAGAAGCAGAAGCTCTGCTGTTGCTAGGAGAACAACGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

145

Amino Acids

16.14

Weight (kDa)

9.71

Isoelectric Point (pI)

68.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AclI	AACGTT	1 cut(s)	431
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	283
AluBI	AGCT	4 cut(s)	141, 153, 199, 408
AluI	AGCT	4 cut(s)	141, 153, 199, 408
Alw21I	GWGCWC	2 cut(s)	68, 201
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	6 cut(s)	102, 171, 174, 209, 268, 318
ApoI	RAATTY	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	2 cut(s)	68, 201
BbvI	GCAGC	6 cut(s)	89, 183, 186, 196, 280, 330
BciVI	GTATCC	1 cut(s)	402
BfaI	CTAG	2 cut(s)	219, 420
BfoI	RGCGCY	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	6 cut(s)	103, 172, 175, 210, 269, 319
BlsI	GCNGC	6 cut(s)	104, 173, 176, 211, 270, 320
BmiI	GGNNCC	2 cut(s)	9, 289
BpiI	GAAGAC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	96
BseXI	GCAGC	6 cut(s)	89, 183, 186, 196, 280, 330
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	2 cut(s)	68, 201
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	68, 201
Bsp143I	GATC	2 cut(s)	253, 273
Bsp19I	CCATGG	1 cut(s)	96
BspANI	GGCC	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	9, 289
BspPI	GGATC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	253, 273
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	355
BstDSI	CCRYGG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	256, 276
BstMBI	GATC	2 cut(s)	253, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 296
BstV1I	GCAGC	6 cut(s)	89, 183, 186, 196, 280, 330
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	4 cut(s)	55, 91, 97, 202
CviJI	RGCY	9 cut(s)	95, 102, 141, 153, 199, 209, 290, 353, 408
CviKI_1	RGCY	9 cut(s)	95, 102, 141, 153, 199, 209, 290, 353, 408
CviQI	GTAC	1 cut(s)	282
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	2 cut(s)	255, 275
DpnII	GATC	2 cut(s)	253, 273
EaeI	YGGCCR	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	4 cut(s)	58, 94, 100, 205
FaiI	YATR	9 cut(s)	14, 56, 84, 92, 98, 203, 237, 248, 389
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	4 cut(s)	54, 90, 96, 201
Fnu4HI	GCNGC	6 cut(s)	103, 172, 175, 210, 269, 319
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	6 cut(s)	103, 172, 175, 210, 269, 319
FspBI	CTAG	2 cut(s)	219, 420
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	6 cut(s)	103, 172, 175, 210, 269, 319
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	4 cut(s)	58, 94, 100, 205
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	2 cut(s)	75, 307
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188III	TCNNGA	2 cut(s)	49, 202
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 296
HpySE526I	ACGT	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	4 cut(s)	58, 94, 100, 205
HspAI	GCGC	1 cut(s)	8
KasI	GGCGCC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	253, 273
LmnI	GCTCC	3 cut(s)	71, 158, 287
LpnPI	CCDG	2 cut(s)	163, 298
Lsp1109I	GCAGC	6 cut(s)	89, 183, 186, 196, 280, 330
MaeI	CTAG	2 cut(s)	219, 420
MaeII	ACGT	1 cut(s)	431
MalI	GATC	2 cut(s)	255, 275
MboI	GATC	2 cut(s)	253, 273
MboII	GAAGA	3 cut(s)	356, 380, 383
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	2 cut(s)	68, 201
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	2 cut(s)	327, 359
MluNI	TGGCCA	1 cut(s)	95
Mly113I	GGCGCC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	3 cut(s)	27, 198, 244
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	215, 296
NarI	GGCGCC	1 cut(s)	8
NcoI	CCATGG	1 cut(s)	96
NdeII	GATC	2 cut(s)	253, 273
NlaIII	CATG	4 cut(s)	58, 94, 100, 205
NlaIV	GGNNCC	2 cut(s)	9, 289
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	75, 307
PkrI	GCNGC	6 cut(s)	104, 173, 176, 211, 270, 320
PluTI	GGCGCC	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	9, 289
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	6 cut(s)	103, 172, 175, 210, 269, 319
Sau3AI	GATC	2 cut(s)	253, 273
SduI	GDGCHC	2 cut(s)	68, 201
SetI	ASST	5 cut(s)	143, 155, 201, 410, 434
SfoI	GGCGCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	327, 359
SspDI	GGCGCC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	219, 420
SstI	GAGCTC	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	96
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	2 cut(s)	73, 78
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	2 cut(s)	327, 359
TfiI	GAWTC	2 cut(s)	75, 307
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseI	GCWGC	6 cut(s)	102, 171, 174, 209, 268, 318
TspDTI	ATGAA	3 cut(s)	17, 320, 357
TspGWI	ACGGA	1 cut(s)	145
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	2 cut(s)	219, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.