RLG00000010528

Uncharacterised conserved protein UCP031279 (InterPro IPR016972)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000667
Physical Location & Seq
Forward (+)
2414227 .. 2414727
501 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010528

Sequence Viewer

Length: 501 bp
ATGAGAAGCACCAAGGCTCAGAACCAGAACCGGTTCCTGAGAATCATCACAGTCCCCATCAGAGCCTTGGGCAAGGCCAAGGACTTTTACGTCAAAAGCATGACGGACGTCGGCGACAGATTCAGCTACGGCGGGAGCACCGTGGCCGGCCCCGGCGGCCAATTCTCCTCGGGTTTACCCAAAAGCTTCAGCACTAGATCGTCATCGTCGAGGTCCAACCAGGGCAACGATGACTTTGCCGAGCTGGTGAGGGCTGCCTCGGCCAGGAGCTACGGGACTCGTATCGACGTGGACAAGATACTTCAAGACCAGCTGAAGAGGTCGGCGACGGCGACGACGATGGGGTCGAGGCAAGTGTTGCCCAAGTGTGGCAGCGTGGCCATGGGACGAATTGACGAGGATGCCGCTTGTGATTTCGAGGAGGAAGGTGACGTGAAGAAGGACTTGTATCCCAGAAGCAGAAGCTATGCCGTCGGAAAGAGAAGCGTTGCGTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.07

Weight (kDa)

9.8

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 89, 343
AatII GACGTC 1 cut(s) 111
AciI CCGC 3 cut(s) 132, 156, 405
AcoI YGGCCR 4 cut(s) 144, 157, 261, 378
AcuI CTGAAG 2 cut(s) 172, 335
AcyI GRCGYC 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 264, 368
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 305
AjiI CACGTC 2 cut(s) 289, 433
AjnI CCWGG 2 cut(s) 219, 263
AluBI AGCT 6 cut(s) 126, 186, 244, 270, 313, 465
AluI AGCT 6 cut(s) 126, 186, 244, 270, 313, 465
Alw21I GWGCWC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 6 cut(s) 75, 144, 148, 157, 261, 378
ApeKI GCWGC 2 cut(s) 254, 372
AsiGI ACCGGT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 149, 213
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 259, 440
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 241, 384
BccI CCATC 2 cut(s) 65, 334
BceAI ACGGC 3 cut(s) 145, 345, 455
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 2 cut(s) 221, 265
BciVI GTATCC 1 cut(s) 459
BcnI CCSGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 195
BfuI GTATCC 1 cut(s) 459
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 4 cut(s) 157, 255, 373, 405
BlsI GCNGC 4 cut(s) 158, 256, 374, 406
Bme1390I CCNGG 3 cut(s) 153, 221, 265
Bme18I GGWCC 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 2 cut(s) 289, 433
BmgT120I GGNCC 2 cut(s) 149, 213
BmiI GGNNCC 2 cut(s) 35, 151
BmrFI CCNGG 3 cut(s) 153, 221, 265
BmsI GCATC 1 cut(s) 391
BoxI GACNNNNGTC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 381
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 368
Bse118I RCCGGY 2 cut(s) 30, 146
Bse8I GATNNNNATC 1 cut(s) 202
BseBI CCWGG 2 cut(s) 221, 265
BseDI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 381
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 264, 368
BseMII CTCAG 2 cut(s) 29, 32
BseRI GAGGAG 2 cut(s) 157, 434
BseXI GCAGC 2 cut(s) 241, 384
BshFI GGCC 6 cut(s) 77, 146, 150, 159, 263, 380
BshTI ACCGGT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 3 cut(s) 31, 147, 153
BslFI GGGAC 3 cut(s) 38, 289, 399
BslI CCNNNNNNNGG 2 cut(s) 264, 368
BsmFI GGGAC 3 cut(s) 38, 289, 399
BsnI GGCC 6 cut(s) 77, 146, 150, 159, 263, 380
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 197
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 3 cut(s) 132, 156, 405
BspANI GGCC 6 cut(s) 77, 146, 150, 159, 263, 380
BspCNI CTCAG 2 cut(s) 30, 31
BspLI GGNNCC 2 cut(s) 35, 151
BsrFI RCCGGY 2 cut(s) 30, 146
BssAI RCCGGY 2 cut(s) 30, 146
BssECI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 381
BssMI GATC 1 cut(s) 197
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 4 cut(s) 12, 66, 78, 381
Bst2UI CCWGG 2 cut(s) 221, 265
Bst4CI ACNGT 2 cut(s) 52, 142
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 18, 38
BstDSI CCRYGG 2 cut(s) 141, 381
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 3 cut(s) 156, 260, 358
BstNI CCWGG 2 cut(s) 221, 265
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 151, 219, 263
BstV1I GCAGC 2 cut(s) 241, 384
BsuI GTATCC 1 cut(s) 459
BsuRI GGCC 6 cut(s) 77, 146, 150, 159, 263, 380
BtgI CCRYGG 2 cut(s) 141, 381
BtrI CACGTC 2 cut(s) 289, 433
BtsCI GGATG 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 148
Cfr10I RCCGGY 2 cut(s) 30, 146
Cfr13I GGNCC 2 cut(s) 149, 213
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 2 cut(s) 100, 382
DdeI CTNAG 2 cut(s) 18, 38
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
DrdI GACNNNNNNGTC 2 cut(s) 89, 343
DseDI GACNNNNNNGTC 2 cut(s) 89, 343
EaeI YGGCCR 4 cut(s) 144, 157, 261, 378
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 4 cut(s) 12, 66, 78, 381
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 172, 335
Eco88I CYCGRG 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 219, 263
EcoT14I CCWWGG 4 cut(s) 12, 66, 78, 381
ErhI CCWWGG 4 cut(s) 12, 66, 78, 381
FaeI CATG 2 cut(s) 103, 385
FaiI YATR 3 cut(s) 101, 383, 468
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 3 cut(s) 38, 289, 399
FatI CATG 2 cut(s) 99, 381
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 4 cut(s) 157, 255, 373, 405
FokI GGATG 1 cut(s) 413
FseI GGCCGGCC 1 cut(s) 150
Fsp4HI GCNGC 4 cut(s) 157, 255, 373, 405
FspBI CTAG 1 cut(s) 195
GluI GCNGC 4 cut(s) 157, 255, 373, 405
HaeIII GGCC 6 cut(s) 77, 146, 150, 159, 263, 380
HapII CCGG 3 cut(s) 31, 147, 153
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 103, 385
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 3 cut(s) 42, 120, 277
HpaII CCGG 3 cut(s) 31, 147, 153
HphI GGTGA 2 cut(s) 259, 440
Hpy166II GTNNAC 2 cut(s) 176, 292
Hpy188I TCNGA 3 cut(s) 21, 62, 476
Hpy188III TCNNGA 2 cut(s) 37, 305
Hpy8I GTNNAC 2 cut(s) 176, 292
Hpy99I CGWCG 7 cut(s) 113, 211, 290, 331, 337, 340, 476
HpyAV CCTTC 2 cut(s) 419, 433
HpyCH4III ACNGT 2 cut(s) 52, 142
HpyCH4IV ACGT 4 cut(s) 90, 108, 288, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 260, 358
HpyF3I CTNAG 2 cut(s) 18, 38
HpySE526I ACGT 4 cut(s) 90, 108, 288, 432
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 103, 385
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 135, 267
Lsp1109I GCAGC 2 cut(s) 241, 384
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 195
MaeII ACGT 4 cut(s) 90, 108, 288, 432
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 328, 448
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 2 cut(s) 161, 390
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 2 cut(s) 240, 454
MnlI CCTC 9 cut(s) 178, 204, 243, 268, 312, 342, 391, 412, 415
Mox20I TGGCCA 1 cut(s) 380
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 32
MscI TGGCCA 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 3 cut(s) 31, 147, 153
MspR9I CCNGG 3 cut(s) 153, 221, 265
MvaI CCWGG 2 cut(s) 221, 265
MwoI GCNNNNNNNGC 3 cut(s) 156, 260, 358
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 381
NdeII GATC 1 cut(s) 197
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 103, 385
NlaIV GGNNCC 2 cut(s) 35, 151
NmeAIII GCCGAG 2 cut(s) 239, 265
NmuCI GTSAC 1 cut(s) 428
PcsI WCGNNNNNNNCGW 4 cut(s) 206, 329, 335, 344
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 42, 120
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 4 cut(s) 158, 256, 374, 406
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 219, 263
PspGI CCWGG 2 cut(s) 219, 263
PspN4I GGNNCC 2 cut(s) 35, 151
PspPI GGNCC 2 cut(s) 149, 213
PvuII CAGCTG 1 cut(s) 313
RigI GGCCGGCC 1 cut(s) 150
SatI GCNGC 4 cut(s) 157, 255, 373, 405
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 2 cut(s) 149, 213
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 153, 221, 265
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 391
SfiI GGCCNNNNNGGCC 1 cut(s) 156
SinI GGWCC 1 cut(s) 213
Sse9I AATT 2 cut(s) 161, 390
SsiI CCGC 3 cut(s) 132, 156, 405
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 151, 219, 263
StyI CCWWGG 4 cut(s) 12, 66, 78, 381
TaaI ACNGT 2 cut(s) 52, 142
TaiI ACGT 4 cut(s) 93, 111, 291, 435
TaqI TCGA 4 cut(s) 209, 285, 347, 417
TasI AATT 2 cut(s) 161, 390
TauI GCSGC 2 cut(s) 159, 407
TfiI GAWTC 2 cut(s) 42, 120
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 254, 372
Tsp45I GTSAC 1 cut(s) 428
TspGWI ACGGA 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 1 cut(s) 195
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.