Rh6DG038700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000667
Physical Location & Seq
Reverse (-)
4181354 .. 4181770
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG038700.1

Sequence Viewer

Length: 417 bp
ATGAGGAACCTCGAAGATTGTGCAGGTGTCAGTGGTTACACCGCTTCGAACGTTCACTTGCCTAGGAGCTTTAGTGTCAACTCTTCAAATTCAAATGGTGATGAGGATTTGAAGCAGCTACGCAGATTAACCGTTTCGACAAAAAAGAACAACGATGTGAAGAAAGAGGGTAACAGAGCAGCTGGAGGTTCCGACACGCAGAGAAGGCCGATTGTTAGAGAACGTCCCATTGTCAAACAACGCACAATGAATAGTGGGATGGGCATGAGGAGTTATAGTGTTGGCTTGAAAATGGGAAGGATTGATGAAGAAATAGCTTCTACTTTTGAGGAAGATGATGAAGTCGATGTCAAGGCAGATCTGTATTCAAGAAGCAGAAGTTATGCTGTTAAAAATAGAAATGCTGGGTTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.38

Weight (kDa)

9.51

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 14
AciI CCGC 1 cut(s) 42
AclI AACGTT 1 cut(s) 51
AcsI RAATTY 1 cut(s) 88
AgsI TTSAA 5 cut(s) 87, 93, 112, 289, 369
AluBI AGCT 4 cut(s) 69, 118, 182, 317
AluI AGCT 4 cut(s) 69, 118, 182, 317
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 115, 179
ApoI RAATTY 1 cut(s) 88
AspA2I CCTAGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 110
AsuII TTCGAA 1 cut(s) 47
AvrII CCTAGG 1 cut(s) 62
BbvI GCAGC 2 cut(s) 127, 191
BccI CCATC 1 cut(s) 253
BcgI CGANNNNNNTGC 1 cut(s) 36
BfaI CTAG 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 14
BglII AGATCT 1 cut(s) 358
BisI GCNGC 2 cut(s) 116, 180
BlnI CCTAGG 1 cut(s) 62
BlsI GCNGC 2 cut(s) 117, 181
BmiI GGNNCC 2 cut(s) 8, 190
BpmI CTGGAG 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 62
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 262, 292
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 283
BseXI GCAGC 2 cut(s) 127, 191
BseYI CCCAGC 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 208
BslFI GGGAC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 47
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 8, 190
BspMI ACCTGC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 47
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 1 cut(s) 361
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 127, 191
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 14
CviAII CATG 1 cut(s) 265
CviJI RGCY 6 cut(s) 69, 118, 182, 208, 285, 317
CviKI_1 RGCY 6 cut(s) 69, 118, 182, 208, 285, 317
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 1 cut(s) 268
FaiI YATR 4 cut(s) 266, 276, 384, 415
FaqI GGGAC 1 cut(s) 210
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 116, 180
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 2 cut(s) 116, 180
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 116, 180
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 208
Hin1II CATG 1 cut(s) 268
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 55, 79
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 2 cut(s) 55, 79
HpyAV CCTTC 2 cut(s) 198, 291
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 2 cut(s) 51, 223
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpySE526I ACGT 2 cut(s) 51, 223
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 3 cut(s) 9, 168, 390
Lsp1109I GCAGC 2 cut(s) 127, 191
MaeI CTAG 1 cut(s) 63
MaeII ACGT 2 cut(s) 51, 223
MaeIII GTNAC 2 cut(s) 35, 170
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 5 cut(s) 26, 75, 172, 320, 344
MflI RGATCY 1 cut(s) 358
MluCI AATT 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 6 cut(s) 20, 97, 160, 179, 261, 322
MseI TTAA 2 cut(s) 128, 390
MspA1I CMGCKG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 358
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 8, 190
NspV TTCGAA 1 cut(s) 47
PaqCI CACCTGC 1 cut(s) 14
PkrI GCNGC 2 cut(s) 117, 181
Psp1406I AACGTT 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 2 cut(s) 8, 190
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 182
SaqAI TTAA 2 cut(s) 128, 390
SatI GCNGC 2 cut(s) 116, 180
Sau3AI GATC 1 cut(s) 358
SetI ASST 9 cut(s) 12, 28, 54, 71, 120, 184, 190, 226, 319
SfuI TTCGAA 1 cut(s) 47
Sse9I AATT 1 cut(s) 88
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 2 cut(s) 54, 226
TaqI TCGA 4 cut(s) 12, 47, 137, 345
TasI AATT 1 cut(s) 88
Tru1I TTAA 2 cut(s) 128, 390
Tru9I TTAA 2 cut(s) 128, 390
TscAI CASTG 1 cut(s) 37
TseI GCWGC 2 cut(s) 115, 179
TspDTI ATGAA 3 cut(s) 263, 321, 354
TspRI CASTG 1 cut(s) 37
XapI RAATTY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 62
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.