MD15G1067000.v1.1

Uncharacterised conserved protein UCP031279 (InterPro IPR016972)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000667
Physical Location & Seq
Forward (+)
4657437 .. 4657961
525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1067000.v1.1.491

Sequence Viewer

Length: 525 bp
ATGAGGAAGACAAAGGTGAATAACCAGAACATGTTCATGAAAATCATCACGGTGCCCATCAGAGCTCTGGGCAAGGCCAAGAACTGTTACGTCGGTAGCATCACGGACGTGGGCGGCAGATTGACCTACGGCGGTACCCCTGGAGGATTTAGTGGTACTTGCGGTCGAGGCCTGCCCAAGAGCTACAGCGTTAAGACAACTTCTTCTAGGTCAAGGGAAGATGACGATTATTCAGAGCTTATTAGGGCTGCGTCAGCAAGGAACTACGAGGAAAGGATGGACGTGAACATGATCATGCAAGAGCACATGAAGCGATCGGCTACAACCACGACTATGCGATCAGATATGGGATCGAAAATCGGATCGTATAATCGGGCAGTTTTGCCAAAGTGCACCGTGGCCATGGGGAGGATTGATGAGGATGCGCCTGAGGATTTTGATGAAGGTGCTGCTGATGTCAAGGGTGAATTGCACCCTAGAAGCAGAAGCTATGCTGTTAGAAAGAAAAGTGCTTTTGCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.21

Weight (kDa)

9.59

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 134
AccB1I GGYRCC 2 cut(s) 52, 134
AciI CCGC 3 cut(s) 114, 132, 162
AclWI GGATC 2 cut(s) 358, 370
AcoI YGGCCR 1 cut(s) 399
AfaI GTAC 2 cut(s) 136, 157
AfiI CCNNNNNNNGG 1 cut(s) 408
AflIII ACRYGT 1 cut(s) 30
AjiI CACGTC 2 cut(s) 109, 283
AjnI CCWGG 1 cut(s) 139
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 4 cut(s) 65, 183, 238, 489
AluI AGCT 4 cut(s) 65, 183, 238, 489
Alw21I GWGCWC 3 cut(s) 67, 306, 395
Alw44I GTGCAC 1 cut(s) 391
AlwI GGATC 2 cut(s) 358, 370
AoxI GGCC 3 cut(s) 75, 169, 399
ApaLI GTGCAC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 248, 449
Asp700I GAANNNNTTC 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 28, 476
AxyI CCTNAGG 1 cut(s) 429
BaeGI GKGCMC 2 cut(s) 57, 395
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
BalI TGGCCA 1 cut(s) 401
BanI GGYRCC 2 cut(s) 52, 134
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 3 cut(s) 67, 306, 395
BbvI GCAGC 2 cut(s) 235, 436
BccI CCATC 2 cut(s) 65, 271
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 141
BclI TGATCA 1 cut(s) 291
BfaI CTAG 2 cut(s) 207, 477
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 3 cut(s) 115, 249, 450
BlsI GCNGC 3 cut(s) 116, 250, 451
Bme1390I CCNGG 1 cut(s) 141
BmgBI CACGTC 2 cut(s) 109, 283
BmiI GGNNCC 2 cut(s) 54, 136
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 108, 412
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 139, 396, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse21I CCTNAGG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 139, 396, 402
BseGI GGATG 2 cut(s) 282, 427
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 420
BseSI GKGCMC 2 cut(s) 57, 395
BseXI GCAGC 2 cut(s) 235, 436
Bsh1285I CGRYCG 2 cut(s) 166, 317
BshFI GGCC 3 cut(s) 77, 171, 401
BshNI GGYRCC 2 cut(s) 52, 134
BsiEI CGRYCG 2 cut(s) 166, 317
BsiHKAI GWGCWC 3 cut(s) 67, 306, 395
BslI CCNNNNNNNGG 1 cut(s) 408
BsnI GGCC 3 cut(s) 77, 171, 401
Bsp1286I GDGCHC 4 cut(s) 57, 67, 306, 395
Bsp143I GATC 5 cut(s) 291, 314, 338, 350, 362
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 3 cut(s) 114, 132, 162
BspANI GGCC 3 cut(s) 77, 171, 401
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 54, 136
BspPI GGATC 2 cut(s) 358, 370
BspT107I GGYRCC 2 cut(s) 52, 134
BssECI CCNNGG 3 cut(s) 139, 396, 402
BssMI GATC 5 cut(s) 291, 314, 338, 350, 362
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 3 cut(s) 52, 86, 397
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 2 cut(s) 396, 402
BstF5I GGATG 2 cut(s) 282, 427
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 5 cut(s) 294, 317, 341, 353, 365
BstMBI GATC 5 cut(s) 291, 314, 338, 350, 362
BstMCI CGRYCG 2 cut(s) 166, 317
BstMWI GCNNNNNNNGC 3 cut(s) 168, 254, 310
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 2 cut(s) 57, 395
BstV1I GCAGC 2 cut(s) 235, 436
BstV2I GAAGAC 1 cut(s) 14
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 3 cut(s) 77, 171, 401
BtgI CCRYGG 2 cut(s) 396, 402
BtrI CACGTC 2 cut(s) 109, 283
BtsCI GGATG 2 cut(s) 282, 427
Cac8I GCNNGC 1 cut(s) 173
CciI TCATGA 1 cut(s) 36
CfoI GCGC 1 cut(s) 427
CseI GACGC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 135, 156
CviAII CATG 6 cut(s) 31, 37, 289, 295, 307, 403
CviJI RGCY 9 cut(s) 65, 77, 171, 183, 238, 248, 320, 401, 489
CviKI_1 RGCY 9 cut(s) 65, 77, 171, 183, 238, 248, 320, 401, 489
CviQI GTAC 2 cut(s) 135, 156
DdeI CTNAG 1 cut(s) 429
DpnI GATC 5 cut(s) 293, 316, 340, 352, 364
DpnII GATC 5 cut(s) 291, 314, 338, 350, 362
EaeI YGGCCR 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 402
Eco147I AGGCCT 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 65
Eco81I CCTNAGG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 6 cut(s) 34, 40, 292, 298, 310, 406
FatI CATG 6 cut(s) 30, 36, 288, 294, 306, 402
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 115, 249, 450
FokI GGATG 2 cut(s) 289, 434
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 3 cut(s) 115, 249, 450
FspBI CTAG 2 cut(s) 207, 477
GlaI GCGC 1 cut(s) 426
GluI GCNGC 3 cut(s) 115, 249, 450
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 3 cut(s) 77, 171, 401
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 427
Hin1II CATG 6 cut(s) 34, 40, 292, 298, 310, 406
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HphI GGTGA 2 cut(s) 28, 476
Hpy166II GTNNAC 2 cut(s) 286, 393
Hpy188I TCNGA 4 cut(s) 62, 235, 343, 362
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 286, 393
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 3 cut(s) 52, 86, 397
HpyCH4IV ACGT 3 cut(s) 90, 108, 282
HpyCH4V TGCA 3 cut(s) 298, 393, 472
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 254, 310
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 3 cut(s) 90, 108, 282
Hsp92II CATG 6 cut(s) 34, 40, 292, 298, 310, 406
HspAI GCGC 1 cut(s) 425
KpnI GGTACC 1 cut(s) 138
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 5 cut(s) 291, 314, 338, 350, 362
LpnPI CCDG 6 cut(s) 38, 53, 126, 153, 185, 441
Lsp1109I GCAGC 2 cut(s) 235, 436
LweI GCATC 2 cut(s) 108, 412
MaeI CTAG 2 cut(s) 207, 477
MaeII ACGT 3 cut(s) 90, 108, 282
MaeIII GTNAC 1 cut(s) 86
MalI GATC 5 cut(s) 293, 316, 340, 352, 364
MboI GATC 5 cut(s) 291, 314, 338, 350, 362
MboII GAAGA 3 cut(s) 19, 195, 230
MhlI GDGCHC 4 cut(s) 57, 67, 306, 395
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 1 cut(s) 467
MluNI TGGCCA 1 cut(s) 401
MnlI CCTC 6 cut(s) 137, 161, 262, 402, 412, 424
Mox20I TGGCCA 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 32
MscI TGGCCA 1 cut(s) 401
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 5 cut(s) 35, 50, 107, 293, 332
Msp20I TGGCCA 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 3 cut(s) 168, 254, 310
NcoI CCATGG 1 cut(s) 402
NdeII GATC 5 cut(s) 291, 314, 338, 350, 362
NlaIII CATG 6 cut(s) 34, 40, 292, 298, 310, 406
NlaIV GGNNCC 2 cut(s) 54, 136
NspI RCATGY 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 36
PceI AGGCCT 1 cut(s) 171
PciI ACATGT 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 116, 250, 451
Ple19I CGATCG 1 cut(s) 317
PscI ACATGT 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 2 cut(s) 54, 136
PvuI CGATCG 1 cut(s) 317
RsaI GTAC 2 cut(s) 136, 157
RsaNI GTAC 2 cut(s) 135, 156
RseI CAYNNNNRTG 5 cut(s) 35, 50, 107, 293, 332
SacI GAGCTC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 115, 249, 450
Sau3AI GATC 5 cut(s) 291, 314, 338, 350, 362
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 4 cut(s) 57, 67, 306, 395
SfaNI GCATC 2 cut(s) 108, 412
SfcI CTRYAG 1 cut(s) 184
SmiMI CAYNNNNRTG 5 cut(s) 35, 50, 107, 293, 332
Sse9I AATT 1 cut(s) 467
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 3 cut(s) 114, 132, 162
SspMI CTAG 2 cut(s) 207, 477
SstI GAGCTC 1 cut(s) 67
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 3 cut(s) 52, 86, 397
TaiI ACGT 3 cut(s) 93, 111, 285
TaqI TCGA 2 cut(s) 166, 353
TasI AATT 1 cut(s) 467
TauI GCSGC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 2 cut(s) 248, 449
TspDTI ATGAA 4 cut(s) 25, 53, 323, 456
TspGWI ACGGA 1 cut(s) 119
VneI GTGCAC 1 cut(s) 391
XceI RCATGY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 2 cut(s) 207, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.