Rroxscaffold_7G00212910

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000667
Physical Location & Seq
Forward (+)
63444019 .. 63444561
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212910.1

Sequence Viewer

Length: 543 bp
ATGAGGACTAGTGCTAGCAAAGCAAAGAAGCAGCAGAATTTGCTTATACGCTTTATTTCTTTACCCTTTCGGACTTTAGCGAAGGCCAGGAACTTCTACATGAGGGGTTTGGAAGATTGCGCCGGTAAGGTGGGTGGCGGCGGCGGTGTTGGCGGTTACGCTGCTTCGCAGGTTCACTTACCGAGGAGCTTTAGTGTCAACTCTTCGGGTTCAAACGACGACGAGGATGTGAGGCAGCTTATCAGAATTGCGTCGTCAAAGAAGAACAATGCAGGGAAAGAGAACAAGGACGACAATATTAGGACAGCAGCTAGTTCAGATGTGAATAGAAGTAGTGTTAGACCAATTGTTGGTGTTAGACAAGCTGTGAATGGTACGAACAATGGGAGAGGGGTGAGGAGCTATAGTGTTGGGTTGAAGATGGGGAGGATTGATGAGGAAAGGGCTTCTACTTTTGAGGAAGATGAAGTCGATGTCAAGGCAGATGTGTATACAAGGAGCAGAAGCTATGCTGTTAATAAGAGAAATGCTGGGTTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.55

Weight (kDa)

10.14

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 350
AccI GTMKAC 1 cut(s) 491
AciI CCGC 4 cut(s) 138, 141, 144, 153
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 213, 418
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 6 cut(s) 189, 238, 311, 365, 402, 507
AluI AGCT 6 cut(s) 189, 238, 311, 365, 402, 507
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 4 cut(s) 31, 161, 235, 308
ApoI RAATTY 1 cut(s) 37
AspLEI GCGC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 406
AsuNHI GCTAGC 1 cut(s) 14
BbvI GCAGC 4 cut(s) 43, 148, 247, 320
BccI CCATC 1 cut(s) 415
BciT130I CCWGG 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 3 cut(s) 9, 15, 312
BfmI CTRYAG 1 cut(s) 403
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 6 cut(s) 32, 139, 142, 162, 236, 309
BlsI GCNGC 6 cut(s) 33, 140, 143, 163, 237, 310
Bme1390I CCNGG 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 182
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 391, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse118I RCCGGY 1 cut(s) 122
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 350
BseRI GAGGAG 2 cut(s) 199, 412
BseXI GCAGC 4 cut(s) 43, 148, 247, 320
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 350
BsnI GGCC 1 cut(s) 86
BspACI CCGC 4 cut(s) 138, 141, 144, 153
BspANI GGCC 1 cut(s) 86
BspMI ACCTGC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 182
BssNAI GTATAC 1 cut(s) 492
Bst1107I GTATAC 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 122
BstMWI GCNNNNNNNGC 4 cut(s) 20, 40, 150, 536
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 403
BstV1I GCAGC 4 cut(s) 43, 148, 247, 320
BstZ17I GTATAC 1 cut(s) 492
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 122
CseI GACGC 1 cut(s) 240
Csp6I GTAC 1 cut(s) 375
CviAII CATG 1 cut(s) 100
CviJI RGCY 8 cut(s) 86, 189, 238, 311, 365, 402, 446, 507
CviKI_1 RGCY 8 cut(s) 86, 189, 238, 311, 365, 402, 446, 507
CviQI GTAC 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 86
FaeI CATG 1 cut(s) 103
FaiI YATR 6 cut(s) 47, 101, 405, 492, 510, 541
FatI CATG 1 cut(s) 99
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 6 cut(s) 32, 139, 142, 162, 236, 309
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 6 cut(s) 32, 139, 142, 162, 236, 309
FspBI CTAG 3 cut(s) 9, 15, 312
GlaI GCGC 1 cut(s) 121
GluI GCNGC 6 cut(s) 32, 139, 142, 162, 236, 309
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 3 cut(s) 175, 199, 492
Hpy188I TCNGA 3 cut(s) 72, 245, 319
Hpy8I GTNNAC 3 cut(s) 175, 199, 492
Hpy99I CGWCG 3 cut(s) 221, 224, 256
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 272, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 40, 150, 536
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 120
LmnI GCTCC 3 cut(s) 186, 399, 498
LpnPI CCDG 6 cut(s) 73, 100, 136, 155, 258, 516
Lsp1109I GCAGC 4 cut(s) 43, 148, 247, 320
MaeI CTAG 3 cut(s) 9, 15, 312
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 5 cut(s) 125, 195, 274, 430, 473
MfeI CAATTG 1 cut(s) 345
MluCI AATT 3 cut(s) 37, 246, 345
MnlI CCTC 9 cut(s) 96, 177, 217, 225, 383, 390, 420, 430, 451
MseI TTAA 1 cut(s) 516
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 88
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 4 cut(s) 20, 40, 150, 536
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 103
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 6 cut(s) 33, 140, 143, 163, 237, 310
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 86
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 6 cut(s) 32, 139, 142, 162, 236, 309
ScrFI CCNGG 1 cut(s) 88
SetI ASST 8 cut(s) 132, 174, 191, 240, 313, 367, 404, 509
SfcI CTRYAG 1 cut(s) 403
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 3 cut(s) 37, 246, 345
SsiI CCGC 4 cut(s) 138, 141, 144, 153
SspI AATATT 1 cut(s) 298
SspMI CTAG 3 cut(s) 9, 15, 312
StyD4I CCNGG 1 cut(s) 86
TaqI TCGA 1 cut(s) 471
TasI AATT 3 cut(s) 37, 246, 345
TauI GCSGC 2 cut(s) 141, 144
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TseI GCWGC 4 cut(s) 31, 161, 235, 308
TspDTI ATGAA 1 cut(s) 480
Van91I CCANNNNNTGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 37
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 3 cut(s) 9, 15, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.