Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Reverse (-)

19637446 .. 19637931

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017669

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGCAACGCGATCAAGAGTAGCAAAGGAAGCAGATTCAGCAGGTTCATGAAGGCGCCTATAAGAGTTTTGATTAAGGCGAGGGATTTCTACATCAAGAGCATGACCGAGTGCTCCACTCGATTCGACTATGGTGGCATGGCCATGGGCTGCCCTACTGCCCAAGTCCCAAGTGCTTTGCCAAGAAGCTTCAGCACCAGCTCCGTCAAGTCGTCAAGCAGCAGCAACAATGATGATTACAGAGAGCTCATGAGGGCTGCTTCTGCTAGAAGCACTTTCGCCTATAACAAAAAAATGGAGGATCTTGGGAGAAAGCAGCAGATCAATAGTACCGGAGCCAATAATGCGATGATGAATCGTAGTCGCAGCGTTGGAATTGGAAGGATTGATGAAGACAAGGCTTGCGAATTTGGTGAAGAAGATGTCAACAAGAATATGTATCCAAGAAGCAGAAGCTCTGCTGTTGCTAGGAGAACAACGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

KA1 NAF Pkinase

Protein Analysis

162

Amino Acids

17.94

Weight (kDa)

10.11

Isoelectric Point (pI)

70.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	55
AccII	CGCG	1 cut(s)	11
AclI	AACGTT	1 cut(s)	479
AclWI	GGATC	1 cut(s)	309
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	331
AluBI	AGCT	4 cut(s)	189, 201, 247, 456
AluI	AGCT	4 cut(s)	189, 201, 247, 456
Alw21I	GWGCWC	2 cut(s)	116, 249
AlwI	GGATC	1 cut(s)	309
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	6 cut(s)	150, 219, 222, 257, 316, 366
ApoI	RAATTY	1 cut(s)	407
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	2 cut(s)	116, 249
BbvI	GCAGC	6 cut(s)	137, 231, 234, 244, 328, 378
BciVI	GTATCC	1 cut(s)	450
BfaI	CTAG	2 cut(s)	267, 468
BfoI	RGCGCY	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	450
BisI	GCNGC	6 cut(s)	151, 220, 223, 258, 317, 367
BlsI	GCNGC	6 cut(s)	152, 221, 224, 259, 318, 368
BmiI	GGNNCC	2 cut(s)	57, 337
BpiI	GAAGAC	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	144
BseXI	GCAGC	6 cut(s)	137, 231, 234, 244, 328, 378
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	116, 249
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	116, 249
Bsp143I	GATC	3 cut(s)	12, 301, 321
Bsp19I	CCATGG	1 cut(s)	144
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	2 cut(s)	48, 249
BspLI	GGNNCC	2 cut(s)	57, 337
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	12, 301, 321
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	403
BstDSI	CCRYGG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	3 cut(s)	15, 304, 324
BstMBI	GATC	3 cut(s)	12, 301, 321
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 39, 263, 344
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	6 cut(s)	137, 231, 234, 244, 328, 378
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	362
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	403
CciI	TCATGA	2 cut(s)	48, 249
CfoI	GCGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	5 cut(s)	49, 103, 139, 145, 250
CviJI	RGCY	9 cut(s)	143, 150, 189, 201, 247, 257, 338, 401, 456
CviKI_1	RGCY	9 cut(s)	143, 150, 189, 201, 247, 257, 338, 401, 456
CviQI	GTAC	1 cut(s)	330
DinI	GGCGCC	1 cut(s)	57
DpnI	GATC	3 cut(s)	14, 303, 323
DpnII	GATC	3 cut(s)	12, 301, 321
EaeI	YGGCCR	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	57
EheI	GGCGCC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	52, 106, 142, 148, 253
FaiI	YATR	9 cut(s)	50, 62, 104, 132, 140, 146, 251, 285, 437
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	48, 102, 138, 144, 249
Fnu4HI	GCNGC	6 cut(s)	151, 220, 223, 258, 317, 367
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	6 cut(s)	151, 220, 223, 258, 317, 367
FspBI	CTAG	2 cut(s)	267, 468
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	6 cut(s)	151, 220, 223, 258, 317, 367
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	52, 106, 142, 148, 253
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	3 cut(s)	36, 123, 355
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188III	TCNNGA	4 cut(s)	16, 49, 97, 250
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	46, 375
HpyCH4IV	ACGT	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 39, 263, 344
HpySE526I	ACGT	1 cut(s)	479
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	52, 106, 142, 148, 253
HspAI	GCGC	1 cut(s)	56
KasI	GGCGCC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	12, 301, 321
LmnI	GCTCC	3 cut(s)	119, 206, 335
LpnPI	CCDG	3 cut(s)	28, 211, 346
Lsp1109I	GCAGC	6 cut(s)	137, 231, 234, 244, 328, 378
MaeI	CTAG	2 cut(s)	267, 468
MaeII	ACGT	1 cut(s)	479
MalI	GATC	3 cut(s)	14, 303, 323
MboI	GATC	3 cut(s)	12, 301, 321
MboII	GAAGA	3 cut(s)	404, 428, 431
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	2 cut(s)	116, 249
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	375, 407
MluNI	TGGCCA	1 cut(s)	143
Mly113I	GGCGCC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	3 cut(s)	75, 246, 292
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	30, 39, 263, 344
NarI	GGCGCC	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	12, 301, 321
NlaIII	CATG	5 cut(s)	52, 106, 142, 148, 253
NlaIV	GGNNCC	2 cut(s)	57, 337
PagI	TCATGA	2 cut(s)	48, 249
PfeI	GAWTC	3 cut(s)	36, 123, 355
PkrI	GCNGC	6 cut(s)	152, 221, 224, 259, 318, 368
PluTI	GGCGCC	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	249
Psp1406I	AACGTT	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	57, 337
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	6 cut(s)	151, 220, 223, 258, 317, 367
Sau3AI	GATC	3 cut(s)	12, 301, 321
SduI	GDGCHC	2 cut(s)	116, 249
SetI	ASST	6 cut(s)	47, 191, 203, 249, 458, 482
SfoI	GGCGCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	375, 407
SspDI	GGCGCC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	267, 468
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	144
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	2 cut(s)	121, 126
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	375, 407
TfiI	GAWTC	3 cut(s)	36, 123, 355
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	6 cut(s)	150, 219, 222, 257, 316, 366
TspDTI	ATGAA	4 cut(s)	37, 65, 368, 405
TspGWI	ACGGA	1 cut(s)	193
XapI	RAATTY	1 cut(s)	407
XspI	CTAG	2 cut(s)	267, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.