RchiOBHm_Chr6g0309871

Uncharacterised conserved protein UCP031279 (InterPro IPR016972)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000667
Physical Location & Seq
Reverse (-)
67351022 .. 67351783
762 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27865

Sequence Viewer

Length: 498 bp
ATGAGAAGCACCAAGGCTCAGAACCAGAACCGGTTCCTGAGAATCATCACAGTCCCCATCAGAGCCTTGGGCAAGGCCAAGGACTTTTACGTCAAAAGCATGACGGACGTCGGCGACAGATTCAGCTACGGCGGGAGCACCATGGCCGGCCCCGGCGGCCAATTCTCCTCGGGTTTACCCAAAAGCTTCAGCACGAGATCGTCATCGTCGAGGTCCAACCAGGGCAACGATGACTTTTCCGAGCTGGTGAGGGCTGCCTCGGCCAGGAGCTACGGGACTCGTATCGACGTGGACAAGATACTTCAGGACCAGCTGAAGAGGTCGGCGACGACGACGATGGGGTCGAGGCAAGTGTTGCCCAAGTGTGGTAGCGTGGCCATGGGACGAATTGACGAGGATGCCGCTTGTGATTTCGAGGAGGAAGGTGACGTGAAGAAGGACTTGTACCCCAGAAGCAGAAGCTATGCTGTCGGAAAGAGAAGCGTTGCGTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.04

Weight (kDa)

9.8

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 89, 340
AatII GACGTC 1 cut(s) 111
AciI CCGC 3 cut(s) 132, 156, 402
AcoI YGGCCR 4 cut(s) 144, 157, 261, 375
AcuI CTGAAG 3 cut(s) 172, 287, 335
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 264, 365
AgeI ACCGGT 1 cut(s) 30
AjiI CACGTC 2 cut(s) 289, 430
AjnI CCWGG 2 cut(s) 219, 263
AluBI AGCT 6 cut(s) 126, 186, 244, 270, 313, 462
AluI AGCT 6 cut(s) 126, 186, 244, 270, 313, 462
Alw21I GWGCWC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 6 cut(s) 75, 144, 148, 157, 261, 375
ApeKI GCWGC 1 cut(s) 254
AsiGI ACCGGT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 3 cut(s) 149, 213, 307
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 259, 437
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 2 cut(s) 213, 307
BalI TGGCCA 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 428, 460
BauI CACGAG 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 241
BccI CCATC 2 cut(s) 65, 331
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 221, 265
BcnI CCSGG 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 3 cut(s) 157, 255, 402
BlsI GCNGC 3 cut(s) 158, 256, 403
Bme1390I CCNGG 3 cut(s) 153, 221, 265
Bme18I GGWCC 2 cut(s) 213, 307
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 2 cut(s) 289, 430
BmgT120I GGNCC 3 cut(s) 149, 213, 307
BmiI GGNNCC 2 cut(s) 35, 151
BmrFI CCNGG 3 cut(s) 153, 221, 265
BmsI GCATC 1 cut(s) 388
BoxI GACNNNNGTC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 378
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 365
Bse118I RCCGGY 2 cut(s) 30, 146
Bse8I GATNNNNATC 1 cut(s) 202
BseBI CCWGG 2 cut(s) 221, 265
BseDI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 378
BseGI GGATG 1 cut(s) 403
BseJI GATNNNNATC 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 264, 365
BseMII CTCAG 2 cut(s) 29, 32
BseRI GAGGAG 2 cut(s) 157, 431
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 6 cut(s) 77, 146, 150, 159, 263, 377
BshTI ACCGGT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 3 cut(s) 31, 147, 153
BslFI GGGAC 3 cut(s) 38, 289, 396
BslI CCNNNNNNNGG 2 cut(s) 264, 365
BsmFI GGGAC 3 cut(s) 38, 289, 396
BsnI GGCC 6 cut(s) 77, 146, 150, 159, 263, 377
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 197
Bsp19I CCATGG 2 cut(s) 141, 378
BspACI CCGC 3 cut(s) 132, 156, 402
BspANI GGCC 6 cut(s) 77, 146, 150, 159, 263, 377
BspCNI CTCAG 2 cut(s) 30, 31
BspLI GGNNCC 2 cut(s) 35, 151
BsrFI RCCGGY 2 cut(s) 30, 146
BssAI RCCGGY 2 cut(s) 30, 146
BssECI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 378
BssMI GATC 1 cut(s) 197
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 193
BssT1I CCWWGG 5 cut(s) 12, 66, 78, 141, 378
Bst2BI CACGAG 1 cut(s) 193
Bst2UI CCWGG 2 cut(s) 221, 265
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 18, 38
BstDSI CCRYGG 2 cut(s) 141, 378
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 3 cut(s) 156, 260, 355
BstNI CCWGG 2 cut(s) 221, 265
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 151, 219, 263
BstV1I GCAGC 1 cut(s) 241
BsuRI GGCC 6 cut(s) 77, 146, 150, 159, 263, 377
BtgI CCRYGG 2 cut(s) 141, 378
BtrI CACGTC 2 cut(s) 289, 430
BtsCI GGATG 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 148
Cfr10I RCCGGY 2 cut(s) 30, 146
Cfr13I GGNCC 3 cut(s) 149, 213, 307
Csp6I GTAC 1 cut(s) 445
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 3 cut(s) 100, 142, 379
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 18, 38
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
DrdI GACNNNNNNGTC 2 cut(s) 89, 340
DseDI GACNNNNNNGTC 2 cut(s) 89, 340
EaeI YGGCCR 4 cut(s) 144, 157, 261, 375
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 5 cut(s) 12, 66, 78, 141, 378
Eco47I GGWCC 2 cut(s) 213, 307
Eco57I CTGAAG 3 cut(s) 172, 287, 335
Eco88I CYCGRG 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 219, 263
EcoT14I CCWWGG 5 cut(s) 12, 66, 78, 141, 378
ErhI CCWWGG 5 cut(s) 12, 66, 78, 141, 378
FaeI CATG 3 cut(s) 103, 145, 382
FaiI YATR 4 cut(s) 101, 143, 380, 465
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FaqI GGGAC 3 cut(s) 38, 289, 396
FatI CATG 3 cut(s) 99, 141, 378
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 157, 255, 402
FokI GGATG 1 cut(s) 410
FseI GGCCGGCC 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 157, 255, 402
GluI GCNGC 3 cut(s) 157, 255, 402
HaeIII GGCC 6 cut(s) 77, 146, 150, 159, 263, 377
HapII CCGG 3 cut(s) 31, 147, 153
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 103, 145, 382
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 3 cut(s) 42, 120, 277
HpaII CCGG 3 cut(s) 31, 147, 153
HphI GGTGA 2 cut(s) 259, 437
Hpy166II GTNNAC 2 cut(s) 176, 292
Hpy188I TCNGA 4 cut(s) 21, 62, 241, 473
Hpy188III TCNNGA 2 cut(s) 37, 305
Hpy8I GTNNAC 2 cut(s) 176, 292
Hpy99I CGWCG 6 cut(s) 113, 211, 290, 331, 334, 337
HpyAV CCTTC 2 cut(s) 416, 430
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 4 cut(s) 90, 108, 288, 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 260, 355
HpyF3I CTNAG 2 cut(s) 18, 38
HpySE526I ACGT 4 cut(s) 90, 108, 288, 429
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 103, 145, 382
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 135, 267
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 388
MaeII ACGT 4 cut(s) 90, 108, 288, 429
MaeIII GTNAC 1 cut(s) 425
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 328, 445
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 2 cut(s) 161, 387
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 2 cut(s) 240, 451
MnlI CCTC 9 cut(s) 178, 204, 243, 268, 312, 339, 388, 409, 412
Mox20I TGGCCA 1 cut(s) 377
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 32
MscI TGGCCA 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 3 cut(s) 31, 147, 153
MspR9I CCNGG 3 cut(s) 153, 221, 265
MvaI CCWGG 2 cut(s) 221, 265
MwoI GCNNNNNNNGC 3 cut(s) 156, 260, 355
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 2 cut(s) 141, 378
NdeII GATC 1 cut(s) 197
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 3 cut(s) 103, 145, 382
NlaIV GGNNCC 2 cut(s) 35, 151
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 425
PcsI WCGNNNNNNNCGW 3 cut(s) 206, 329, 341
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 42, 120
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 3 cut(s) 158, 256, 403
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 219, 263
PspGI CCWGG 2 cut(s) 219, 263
PspN4I GGNNCC 2 cut(s) 35, 151
PspPI GGNCC 3 cut(s) 149, 213, 307
PvuII CAGCTG 1 cut(s) 313
RigI GGCCGGCC 1 cut(s) 150
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SatI GCNGC 3 cut(s) 157, 255, 402
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 3 cut(s) 149, 213, 307
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 153, 221, 265
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 388
SfiI GGCCNNNNNGGCC 1 cut(s) 156
SinI GGWCC 2 cut(s) 213, 307
Sse9I AATT 2 cut(s) 161, 387
SsiI CCGC 3 cut(s) 132, 156, 402
StyD4I CCNGG 3 cut(s) 151, 219, 263
StyI CCWWGG 5 cut(s) 12, 66, 78, 141, 378
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 4 cut(s) 93, 111, 291, 432
TaqI TCGA 4 cut(s) 209, 285, 344, 414
TasI AATT 2 cut(s) 161, 387
TauI GCSGC 2 cut(s) 159, 404
TfiI GAWTC 2 cut(s) 42, 120
TseFI GTSAC 1 cut(s) 425
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 425
TspGWI ACGGA 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 213, 307
XagI CCTNNNNNAGG 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 32
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.