Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Reverse (-)

17188603 .. 17189085

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1188200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAAAACATGAAGAAACCTAGCAAAGAAAGCAGACTCACAAAGTTCATGAAGGCCCCCCTAAGGGTTTTAATCAAGGCCAGGGATTTCTACATCATGAGCATGACCGAGTGCTCCGGTCAATTCGATTACGGCACGGCCATGGGATGCCCTGGTGCACAGGTCCCAAGTACTTTGCCTAGAAGCTTCAGCACAAGCTCTACCAGATCAAGCACTGCCGATAACGAAGATTACAGAGAGCTTACGAGGGCTGCTTCTGCTAGGAGCTTAAGGAATAAAATTGAATTTGATCTTGCTCGAAAAGCGCAGCTTCCTAGGCAGCCTCCGGTGGCTGGAGTGCCCAACGCTATGTCTCGCAGTCGAAGTGTTGGAATCGGAAGGATCGACGAAGACAAGGCGTGTGAATTTGAAGAAGAAGTCCAGTTCAAGAGAGATGTGTATCCGAGAAGTAGGAGCTATGCTGTTTCTAGGAGAACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.09

Weight (kDa)

9.85

Isoelectric Point (pI)

78.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	389
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	284, 404
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	3 cut(s)	63, 64, 332
AflII	CTTAAG	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	284, 410, 427
AjnI	CCWGG	2 cut(s)	80, 151
AluBI	AGCT	6 cut(s)	186, 198, 241, 267, 310, 456
AluI	AGCT	6 cut(s)	186, 198, 241, 267, 310, 456
Alw21I	GWGCWC	2 cut(s)	116, 160
Alw26I	GTCTC	1 cut(s)	357
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	3 cut(s)	54, 78, 138
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	251, 307, 319
ApoI	RAATTY	2 cut(s)	284, 404
AspA2I	CCTAGG	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	55, 163
AvaII	GGWCC	1 cut(s)	163
AvrII	CCTAGG	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	62
BaeGI	GKGCMC	2 cut(s)	160, 342
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	2 cut(s)	116, 160
BbvI	GCAGC	3 cut(s)	238, 319, 331
BceAI	ACGGC	2 cut(s)	148, 153
BciT130I	CCWGG	2 cut(s)	82, 153
BciVI	GTATCC	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	357
BfaI	CTAG	5 cut(s)	21, 180, 261, 315, 468
BfrI	CTTAAG	1 cut(s)	268
BfuI	GTATCC	1 cut(s)	450
BisI	GCNGC	3 cut(s)	252, 308, 320
BlnI	CCTAGG	1 cut(s)	314
BlsI	GCNGC	3 cut(s)	253, 309, 321
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	82, 153
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	55, 163
BmiI	GGNNCC	2 cut(s)	57, 165
BmrFI	CCNGG	2 cut(s)	82, 153
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	4 cut(s)	81, 141, 151, 314
BsaWI	WCCGGW	2 cut(s)	116, 325
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 64, 332
Bse1I	ACTGG	1 cut(s)	421
Bse21I	CCTNAGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	82, 153
BseDI	CCNNGG	4 cut(s)	81, 141, 151, 314
BseGI	GGATG	1 cut(s)	152
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	3 cut(s)	63, 64, 332
BseNI	ACTGG	1 cut(s)	421
BseSI	GKGCMC	2 cut(s)	160, 342
BseXI	GCAGC	3 cut(s)	238, 319, 331
BshFI	GGCC	3 cut(s)	56, 80, 140
BsiHKAI	GWGCWC	2 cut(s)	116, 160
BsiSI	CCGG	2 cut(s)	117, 326
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	3 cut(s)	63, 64, 332
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	56, 80, 140
Bsp1286I	GDGCHC	3 cut(s)	116, 160, 342
Bsp143I	GATC	3 cut(s)	206, 289, 381
Bsp19I	CCATGG	1 cut(s)	141
BspANI	GGCC	3 cut(s)	56, 80, 140
BspHI	TCATGA	2 cut(s)	48, 96
BspLI	GGNNCC	2 cut(s)	57, 165
BspPI	GGATC	1 cut(s)	389
BspTI	CTTAAG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	4 cut(s)	81, 141, 151, 314
BssMI	GATC	3 cut(s)	206, 289, 381
BssT1I	CCWWGG	2 cut(s)	141, 314
Bst2UI	CCWGG	2 cut(s)	82, 153
BstAFI	CTTAAG	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	62
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	3 cut(s)	209, 292, 384
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	3 cut(s)	206, 289, 381
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 257, 302, 316
BstNI	CCWGG	2 cut(s)	82, 153
BstSCI	CCNGG	2 cut(s)	80, 151
BstSLI	GKGCMC	2 cut(s)	160, 342
BstV1I	GCAGC	3 cut(s)	238, 319, 331
BstV2I	GAAGAC	1 cut(s)	396
Bsu36I	CCTNAGG	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	3 cut(s)	56, 80, 140
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	152
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
CciI	TCATGA	2 cut(s)	48, 96
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	55, 163
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	5 cut(s)	10, 49, 97, 103, 142
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	62
DpnI	GATC	3 cut(s)	208, 291, 383
DpnII	GATC	3 cut(s)	206, 289, 381
EaeI	YGGCCR	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	141, 314
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	62
EcoO109I	RGGNCCY	2 cut(s)	55, 163
EcoRII	CCWGG	2 cut(s)	80, 151
EcoT14I	CCWWGG	2 cut(s)	141, 314
ErhI	CCWWGG	2 cut(s)	141, 314
FaeI	CATG	5 cut(s)	13, 52, 100, 106, 145
FaiI	YATR	7 cut(s)	11, 50, 98, 104, 143, 350, 459
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	5 cut(s)	9, 48, 96, 102, 141
Fnu4HI	GCNGC	3 cut(s)	252, 308, 320
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	3 cut(s)	252, 308, 320
FspBI	CTAG	5 cut(s)	21, 180, 261, 315, 468
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	3 cut(s)	252, 308, 320
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	3 cut(s)	56, 80, 140
HapII	CCGG	2 cut(s)	117, 326
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	5 cut(s)	13, 52, 100, 106, 145
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	2 cut(s)	36, 372
HpaII	CCGG	2 cut(s)	117, 326
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	377, 444
Hpy188III	TCNNGA	3 cut(s)	49, 97, 427
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	46, 372
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 257, 302, 316
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	13, 52, 100, 106, 145
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	3 cut(s)	206, 289, 381
LmnI	GCTCC	3 cut(s)	119, 264, 453
Lsp1109I	GCAGC	3 cut(s)	238, 319, 331
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	5 cut(s)	21, 180, 261, 315, 468
MalI	GATC	3 cut(s)	208, 291, 383
MboI	GATC	3 cut(s)	206, 289, 381
MboII	GAAGA	5 cut(s)	25, 239, 401, 422, 425
MhlI	GDGCHC	3 cut(s)	116, 160, 342
MluCI	AATT	5 cut(s)	122, 279, 284, 404, 478
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	2 cut(s)	240, 333
MseI	TTAA	2 cut(s)	71, 269
MslI	CAYNNNNRTG	2 cut(s)	101, 140
MspCI	CTTAAG	1 cut(s)	268
MspI	CCGG	2 cut(s)	117, 326
MspR9I	CCNGG	2 cut(s)	82, 153
MvaI	CCWGG	2 cut(s)	82, 153
MwoI	GCNNNNNNNGC	4 cut(s)	30, 257, 302, 316
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	206, 289, 381
NlaIII	CATG	5 cut(s)	13, 52, 100, 106, 145
NlaIV	GGNNCC	2 cut(s)	57, 165
PagI	TCATGA	2 cut(s)	48, 96
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	253, 309, 321
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	80, 151
PspGI	CCWGG	2 cut(s)	80, 151
PspN4I	GGNNCC	2 cut(s)	57, 165
PspPI	GGNCC	2 cut(s)	55, 163
PspPPI	RGGWCCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	2 cut(s)	101, 140
SaqAI	TTAA	2 cut(s)	71, 269
SatI	GCNGC	3 cut(s)	252, 308, 320
Sau3AI	GATC	3 cut(s)	206, 289, 381
Sau96I	GGNCC	2 cut(s)	55, 163
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	2 cut(s)	82, 153
SduI	GDGCHC	3 cut(s)	116, 160, 342
SetI	ASST	8 cut(s)	22, 165, 188, 200, 243, 269, 312, 458
SfaNI	GCATC	1 cut(s)	137
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	101, 140
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	5 cut(s)	122, 279, 284, 404, 478
SspMI	CTAG	5 cut(s)	21, 180, 261, 315, 468
StyD4I	CCNGG	2 cut(s)	80, 151
StyI	CCWWGG	2 cut(s)	141, 314
TaqI	TCGA	4 cut(s)	126, 298, 361, 384
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	5 cut(s)	122, 279, 284, 404, 478
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	2 cut(s)	71, 269
Tru9I	TTAA	2 cut(s)	71, 269
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	3 cut(s)	251, 307, 319
TspDTI	ATGAA	3 cut(s)	26, 37, 65
TspRI	CASTG	1 cut(s)	220
Vha464I	CTTAAG	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	2 cut(s)	284, 404
XmaJI	CCTAGG	1 cut(s)	314
XspI	CTAG	5 cut(s)	21, 180, 261, 315, 468
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.