AT1G58420

Uncharacterised conserved protein UCP031279 (InterPro IPR016972)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000667
Physical Location & Seq
Forward (+)
21707175 .. 21708125
951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58420.1

Sequence Viewer

Length: 540 bp
ATGGGAAAGAGAGGACAAAAACAGAACAGGTTCTTGAGAATCGTCACCATGCCTCTTAAAGTTCTATGCAAAGCTCGTGATCTCTACATGAGAAGCATCACAGGTTGTGCAGCTCGAACTCACTACTCTTCAGCCGTCGACGCCGCATCCGTTCCATTTCCGAGAAGCCGGAGTACTTCCTCCGCCTTCTCTTCCTCTGCCTCTTCTCGGAGAAGATCTTCGGATTTCACTTTCGACGATGATTATAGCGAGCTGCTTAGAGCTGCTTCCGTTAGGAGTTTAGGTCATAAGAATGAGATTGACATGATCATACAACAACAGCAACAGCAGCAGCAGCAACGGCAGGAGAATCGCGTTGCGATGGGAGCGGTTACGGTTAAAGGCGGTTTGCCTAAGAGCTCGAGTGTTGGGATGACAATGGCTAGGATTGATGAAGAAGATGAAGAAGAAGGATCTGTAAAGAATCAAAAGAAGGGATCTGATTTCTTATATCCTCGTAGCAGATCACATGCTGTTACTATTAGAGGATCCAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.0

Weight (kDa)

10.16

Isoelectric Point (pI)

76.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 138
AccII CGCG 1 cut(s) 354
AciI CCGC 4 cut(s) 144, 183, 368, 384
AclWI GGATC 4 cut(s) 460, 484, 522, 535
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 207
AluBI AGCT 5 cut(s) 74, 113, 253, 263, 399
AluI AGCT 5 cut(s) 74, 113, 253, 263, 399
Alw21I GWGCWC 1 cut(s) 401
AlwI GGATC 4 cut(s) 460, 484, 522, 535
Ama87I CYCGRG 1 cut(s) 400
ApeKI GCWGC 6 cut(s) 110, 253, 263, 328, 331, 334
Asp700I GAANNNNTTC 2 cut(s) 29, 217
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 400
BamHI GGATCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 401
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BauI CACGAG 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 6 cut(s) 122, 240, 250, 340, 343, 346
BccI CCATC 1 cut(s) 355
BceAI ACGGC 2 cut(s) 119, 356
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BclI TGATCA 1 cut(s) 306
BfaI CTAG 1 cut(s) 423
BglII AGATCT 1 cut(s) 215
BisI GCNGC 7 cut(s) 111, 144, 254, 264, 329, 332, 335
BlsI GCNGC 7 cut(s) 112, 145, 255, 265, 330, 333, 336
BmcAI AGTACT 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 529
BmsI GCATC 2 cut(s) 105, 155
BpuEI CTTGAG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 146, 417
BseLI CCNNNNNNNGG 1 cut(s) 207
BseXI GCAGC 6 cut(s) 122, 240, 250, 340, 343, 346
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 401
Bsp143I GATC 7 cut(s) 79, 215, 306, 452, 476, 503, 527
BspACI CCGC 4 cut(s) 144, 183, 368, 384
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 4 cut(s) 460, 484, 522, 535
BsrBI CCGCTC 1 cut(s) 368
BssMI GATC 7 cut(s) 79, 215, 306, 452, 476, 503, 527
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 3 cut(s) 133, 196, 208
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 257, 393
BstF5I GGATG 2 cut(s) 146, 417
BstFNI CGCG 1 cut(s) 354
BstKTI GATC 7 cut(s) 82, 218, 309, 455, 479, 506, 530
BstMBI GATC 7 cut(s) 79, 215, 306, 452, 476, 503, 527
BstMWI GCNNNNNNNGC 5 cut(s) 140, 328, 334, 340, 365
BstNSI RCATGY 1 cut(s) 512
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 6 cut(s) 122, 240, 250, 340, 343, 346
BstX2I RGATCY 4 cut(s) 215, 452, 476, 527
BstYI RGATCY 4 cut(s) 215, 452, 476, 527
BtgZI GCGATG 1 cut(s) 374
BtsCI GGATG 2 cut(s) 146, 417
Cac8I GCNNGC 1 cut(s) 251
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 174
CviAII CATG 4 cut(s) 49, 88, 304, 509
CviJI RGCY 8 cut(s) 74, 113, 134, 168, 253, 263, 399, 422
CviKI_1 RGCY 8 cut(s) 74, 113, 134, 168, 253, 263, 399, 422
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 2 cut(s) 257, 393
DpnI GATC 7 cut(s) 81, 217, 308, 454, 478, 505, 529
DpnII GATC 7 cut(s) 79, 215, 306, 452, 476, 503, 527
Eam1104I CTCTTC 3 cut(s) 133, 196, 208
EarI CTCTTC 3 cut(s) 133, 196, 208
EciI GGCGGA 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 399
Eco24I GRGCYC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 401
FaeI CATG 4 cut(s) 52, 91, 307, 512
FaiI YATR 9 cut(s) 50, 67, 89, 246, 288, 305, 311, 490, 510
FatI CATG 4 cut(s) 48, 87, 303, 508
FbaI TGATCA 1 cut(s) 306
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 7 cut(s) 111, 144, 254, 264, 329, 332, 335
FokI GGATG 2 cut(s) 133, 424
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 7 cut(s) 111, 144, 254, 264, 329, 332, 335
FspBI CTAG 1 cut(s) 423
GluI GCNGC 7 cut(s) 111, 144, 254, 264, 329, 332, 335
HapII CCGG 1 cut(s) 169
HgaI GACGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 4 cut(s) 52, 91, 307, 512
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 3 cut(s) 39, 349, 463
HpaII CCGG 1 cut(s) 169
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 162, 210, 223, 481
Hpy188III TCNNGA 2 cut(s) 34, 77
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 3 cut(s) 140, 143, 239
HpyAV CCTTC 3 cut(s) 196, 443, 466
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 2 cut(s) 69, 110
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 328, 334, 340, 365
HpyF3I CTNAG 2 cut(s) 257, 393
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 4 cut(s) 52, 91, 307, 512
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 7 cut(s) 79, 215, 306, 452, 476, 503, 527
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 4 cut(s) 13, 87, 182, 329
Lsp1109I GCAGC 6 cut(s) 122, 240, 250, 340, 343, 346
LweI GCATC 2 cut(s) 105, 155
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 43, 370, 514
MalI GATC 7 cut(s) 81, 217, 308, 454, 478, 505, 529
MbiI CCGCTC 1 cut(s) 368
MboI GATC 7 cut(s) 79, 215, 306, 452, 476, 503, 527
MboII GAAGA 9 cut(s) 120, 183, 195, 210, 225, 446, 449, 455, 458
MflI RGATCY 4 cut(s) 215, 452, 476, 527
MhlI GDGCHC 1 cut(s) 401
MnlI CCTC 7 cut(s) 5, 63, 190, 205, 211, 504, 518
MroXI GAANNNNTTC 2 cut(s) 29, 217
MseI TTAA 3 cut(s) 57, 378, 538
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 5 cut(s) 140, 328, 334, 340, 365
NdeII GATC 7 cut(s) 79, 215, 306, 452, 476, 503, 527
NlaIII CATG 4 cut(s) 52, 91, 307, 512
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 2 cut(s) 29, 217
PfeI GAWTC 3 cut(s) 39, 349, 463
PkrI GCNGC 7 cut(s) 112, 145, 255, 265, 330, 333, 336
Psp124BI GAGCTC 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 529
PspXI VCTCGAGB 1 cut(s) 400
PsuI RGATCY 4 cut(s) 215, 452, 476, 527
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 1 cut(s) 401
SalI GTCGAC 1 cut(s) 137
SaqAI TTAA 3 cut(s) 57, 378, 538
SatI GCNGC 7 cut(s) 111, 144, 254, 264, 329, 332, 335
Sau3AI GATC 7 cut(s) 79, 215, 306, 452, 476, 503, 527
ScaI AGTACT 1 cut(s) 175
SduI GDGCHC 1 cut(s) 401
SetI ASST 8 cut(s) 32, 76, 106, 115, 255, 265, 286, 401
SfaNI GCATC 2 cut(s) 105, 155
Sfr274I CTCGAG 1 cut(s) 400
SgrDI CGTCGACG 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 2 cut(s) 34, 400
SmoI CTYRAG 2 cut(s) 34, 400
SsiI CCGC 4 cut(s) 144, 183, 368, 384
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 401
TaaI ACNGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 115, 138, 234, 401
TatI WGTACW 1 cut(s) 173
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 3 cut(s) 39, 349, 463
Tru1I TTAA 3 cut(s) 57, 378, 538
Tru9I TTAA 3 cut(s) 57, 378, 538
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 6 cut(s) 110, 253, 263, 328, 331, 334
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 447, 456
TspGWI ACGGA 2 cut(s) 139, 259
XceI RCATGY 1 cut(s) 512
XhoI CTCGAG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 2 cut(s) 29, 217
XspI CTAG 1 cut(s) 423
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.