Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000667

Physical Location & Seq

Genomic Coordinates Forward (+)

63436296 .. 63436808

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGGACTGCAAGCAAAGCAAAGAAGCAAAGCAAGTTGATGCGCTTTATTTCTACACCCATTAGGACCTTAACAAAGGCCAAGAACTTCTACATGAGGAACCTCGAAGATTGTGCACGTAAGGTGGGTTATGGTGGTGCGAGGTGTCGGTGGTTGCACTTTGCTTCGAACGTTCACTTGCCTAGGAGCTTTAGTGTCAACTCTTCAAATTCAAATGGTGATGAGGATTTGAAGCGACTACGCAGATTAACCGTTTTGACAAAAAAGAACAACGATGTGAAGAAAGAGGGTAACGAAGCGGTGGAGGTTCCGACACGCGAGAGAAGGCCGATTGTTAGAGAATGTCCCATTGTCAAAAAACGCACAAGGAATAGTGGGATGGGCATGAGGAGTAATAGTGTTGGCTTGAAAATGGGAAGGATTGATGAAGAAATAGCTTCTACTTTTGAGGAAGATGATGAAGTCGATGTCAAGCGGACACTGTATTCAAGAAGCGAGAAGTTATCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.54

Weight (kDa)

10.17

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10140 AT1G58420
fragaria_vesca	FvH4_1g17980 FvH4_2g03511 FvH4_2g03520 FvH4_2g32830
malus_domestica	MD02G1188200.v1.1 MD08G1080000.v1.1 MD15G1067000.v1.1 MD15G1299400.v1.1
prunus_persica	Prupe.1G420800_v2.0.a1 Prupe.6G218500_v2.0.a1 Prupe.8G148600_v2.0.a1 Prupe.8G148800_v2.0.a1
pyrus_communis	pycom15g06350 pycom15g26190
rosa_chinensis	RchiOBHm_Chr2g0108431 RchiOBHm_Chr6g0248901 RchiOBHm_Chr6g0248931 RchiOBHm_Chr6g0309871
rosa_laevigata	RLG00000010528 RLG00000015110 RLG00000015112 RLG00000015118 RLG00000015121 RLG00000015122 RLG00000017669
rosa_multiflora	Rmu_sc0001562.1_g000003 Rmu_sc0001562.1_g000016 Rmu_sc0002372.1_g000036 Rmu_sc0002393.1_g000024 Rmu_sc0002393.1_g000026 Rmu_sc0002393.1_g000027 Rmu_sc0002393.1_g000036 Rmu_sc0004703.1_g000002 Rmu_sc0009208.1_g000023
rosa_roxburghii	Rroxscaffold_2G00135130 Rroxscaffold_7G00159090 Rroxscaffold_7G00212850 Rroxscaffold_7G00212890 Rroxscaffold_7G00212900 Rroxscaffold_7G00212910
rosa_rugosa	Rorug02G0153500 Rorug05G0533500 Rorug05G0533600 Rorug05G0534200 Rorug05G0534300 Rorug06G0375500
rosa_samantha	Rh2AG201900 Rh2BG215000 Rh2CG206100 Rh2DG209200 Rh6AG051200 Rh6AG051300 Rh6AG051600 Rh6AG489000 Rh6BG045500 Rh6BG045600 Rh6BG498500 Rh6CG043400 Rh6CG043500 Rh6CG043700 Rh6CG043900 Rh6CG503300 Rh6DG038600 Rh6DG038700 Rh6DG038900 Rh6DG039100 Rh6DG489500
rosa_wichuraiana	Rw2G016150 Rw6G004470 Rw6G004480 Rw6G004500 Rw6G004570 Rw6G004580 Rw6G042580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	318
AciI	CCGC	2 cut(s)	299, 475
AclI	AACGTT	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	208
AgsI	TTSAA	5 cut(s)	207, 213, 232, 409, 489
AluBI	AGCT	2 cut(s)	189, 437
AluI	AGCT	2 cut(s)	189, 437
Alw21I	GWGCWC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	78, 326
ApaLI	GTGCAC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	208
AspA2I	CCTAGG	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	230
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	66
AvrII	CCTAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BfaI	CTAG	1 cut(s)	183
BlnI	CCTAGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	2 cut(s)	101, 309
BmsI	GCATC	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	4 cut(s)	178, 208, 382, 412
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	2 cut(s)	80, 328
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	80, 328
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	118
BspACI	CCGC	2 cut(s)	299, 475
BspANI	GGCC	2 cut(s)	80, 328
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	101, 309
BspT104I	TTCGAA	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	253, 483
Bst6I	CTCTTC	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	119
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstSLI	GKGCMC	1 cut(s)	118
BstUI	CGCG	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	80, 328
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	66
CviAII	CATG	2 cut(s)	94, 385
CviJI	RGCY	5 cut(s)	80, 189, 328, 405, 437
CviKI_1	RGCY	5 cut(s)	80, 189, 328, 405, 437
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	2 cut(s)	97, 388
FaiI	YATR	3 cut(s)	95, 132, 386
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	2 cut(s)	93, 384
FokI	GGATG	1 cut(s)	391
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	80, 328
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	97, 388
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	3 cut(s)	116, 175, 199
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	1 cut(s)	489
Hpy8I	GTNNAC	3 cut(s)	116, 175, 199
HpyAV	CCTTC	2 cut(s)	318, 411
HpyCH4III	ACNGT	2 cut(s)	253, 483
HpyCH4IV	ACGT	2 cut(s)	118, 171
HpyCH4V	TGCA	3 cut(s)	11, 116, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpySE526I	ACGT	2 cut(s)	118, 171
Hsp92II	CATG	2 cut(s)	97, 388
HspAI	GCGC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	186
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	2 cut(s)	118, 171
MaeIII	GTNAC	1 cut(s)	290
MboII	GAAGA	5 cut(s)	119, 195, 292, 440, 464
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	8 cut(s)	90, 113, 135, 217, 280, 298, 381, 442
MseI	TTAA	3 cut(s)	71, 248, 511
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	97, 388
NlaIV	GGNNCC	2 cut(s)	101, 309
NspV	TTCGAA	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	66
Psp1406I	AACGTT	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	101, 309
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
SaqAI	TTAA	3 cut(s)	71, 248, 511
Sau96I	GGNCC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	9 cut(s)	71, 105, 121, 126, 146, 174, 191, 309, 439
SfaNI	GCATC	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	2 cut(s)	299, 475
SspMI	CTAG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	253, 483
TaiI	ACGT	2 cut(s)	121, 174
TaqI	TCGA	3 cut(s)	105, 167, 465
TasI	AATT	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	71, 248, 511
Tru9I	TTAA	3 cut(s)	71, 248, 511
TscAI	CASTG	1 cut(s)	486
TspDTI	ATGAA	2 cut(s)	441, 474
TspRI	CASTG	1 cut(s)	486
VneI	GTGCAC	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	208
XmaJI	CCTAGG	1 cut(s)	182
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.