FvH4_2g03511

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000667
Physical Location & Seq
Reverse (-)
2823159 .. 2823713
555 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03511.t1

Sequence Viewer

Length: 555 bp
ATGAGGACTACTAGTGCTAGCAAAGCAAAGAAGCAGCAGAATTTGTTGATGCGCTTTATTTCTATACCCTTTAGGACTTTAGCCAAGGCCAGGAACTTCTACATGAGGGGTTTGGAAGATTGTGCCGGTAAGGTTGGCGGCGGCGGTGCTGGCGGTTACACTGCTTCGCAAGTTCACTTACCCCGGAGCTTTAGTGTCAACTCTTCGGGTTCGAACGACGAGGACGATGTGAGGCAGCTTATCAGAAATGCGTCGGCAAAGAAGAACAATGCAGGGAAAGAGAACAAGGACGATAATATTAGGGCAGCAGCAACAAGTTCAGATGTGAATAGAAGTAGTGTTAGAGTTAGACCAATTGTTGGTGTTAGACAAGCAGCCAATTATAGTTCGAACAATGGGAGAGGGGTGAGGAGTTATAGTGTTGGGTTGAAGATGGGGAGGATCGATGAGGAAAGGGCTTCTACTTTTGAGGAAGATGAAGTGGATGTCAAGGCAGATGTGTATACAAGAAGCAGAAGTTATGCTGTTAATAAGAGAAATGCTGGATTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.11

Weight (kDa)

10.17

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 359
AccI GTMKAC 1 cut(s) 503
AciI CCGC 4 cut(s) 138, 141, 144, 153
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 1 cut(s) 40
AfiI CCNNNNNNNGG 2 cut(s) 90, 359
AgsI TTSAA 1 cut(s) 430
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 2 cut(s) 189, 238
AluI AGCT 2 cut(s) 189, 238
AlwI GGATC 1 cut(s) 449
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 5 cut(s) 34, 235, 305, 308, 374
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 418
AsuII TTCGAA 2 cut(s) 212, 389
AsuNHI GCTAGC 1 cut(s) 17
BbvI GCAGC 5 cut(s) 46, 247, 317, 320, 386
BccI CCATC 1 cut(s) 427
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 184
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 18
BisI GCNGC 7 cut(s) 35, 139, 142, 236, 306, 309, 375
BlsI GCNGC 7 cut(s) 36, 140, 143, 237, 307, 310, 376
Bme1390I CCNGG 2 cut(s) 91, 184
BmrFI CCNGG 2 cut(s) 91, 184
BmsI GCATC 1 cut(s) 39
BmtI GCTAGC 1 cut(s) 21
Bpu14I TTCGAA 2 cut(s) 212, 389
BpuMI CCSGG 1 cut(s) 184
Bsa29I ATCGAT 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 84, 182
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 403, 433
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 359
Bse118I RCCGGY 1 cut(s) 125
BseBI CCWGG 1 cut(s) 91
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 84, 182
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 90, 359
BseRI GAGGAG 1 cut(s) 424
BseXI GCAGC 5 cut(s) 46, 247, 317, 320, 386
BshFI GGCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 444
BsiSI CCGG 2 cut(s) 126, 184
BslI CCNNNNNNNGG 2 cut(s) 90, 359
BsnI GGCC 1 cut(s) 89
Bsp119I TTCGAA 2 cut(s) 212, 389
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 4 cut(s) 138, 141, 144, 153
BspANI GGCC 1 cut(s) 89
BspDI ATCGAT 1 cut(s) 444
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 1 cut(s) 449
BspT104I TTCGAA 2 cut(s) 212, 389
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 84, 182
BssMI GATC 1 cut(s) 441
BssNAI GTATAC 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 84
Bst1107I GTATAC 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 208
BstBI TTCGAA 2 cut(s) 212, 389
BstC8I GCNNGC 2 cut(s) 19, 151
BstF5I GGATG 1 cut(s) 490
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 2 cut(s) 23, 150
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 89, 182
BstV1I GCAGC 5 cut(s) 46, 247, 317, 320, 386
BstZ17I GTATAC 1 cut(s) 504
Bsu15I ATCGAT 1 cut(s) 444
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 444
BtsCI GGATG 1 cut(s) 490
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 19, 151
CfoI GCGC 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 125
ClaI ATCGAT 1 cut(s) 444
CseI GACGC 1 cut(s) 240
CviAII CATG 1 cut(s) 103
CviJI RGCY 6 cut(s) 83, 89, 189, 238, 377, 458
CviKI_1 RGCY 6 cut(s) 83, 89, 189, 238, 377, 458
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 106
FaiI YATR 7 cut(s) 65, 104, 384, 417, 504, 522, 553
FatI CATG 1 cut(s) 102
FblI GTMKAC 1 cut(s) 503
Fnu4HI GCNGC 7 cut(s) 35, 139, 142, 236, 306, 309, 375
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 7 cut(s) 35, 139, 142, 236, 306, 309, 375
FspBI CTAG 2 cut(s) 12, 18
GlaI GCGC 1 cut(s) 53
GluI GCNGC 7 cut(s) 35, 139, 142, 236, 306, 309, 375
HaeIII GGCC 1 cut(s) 89
HapII CCGG 2 cut(s) 126, 184
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaII CCGG 2 cut(s) 126, 184
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 3 cut(s) 175, 199, 504
Hpy188I TCNGA 2 cut(s) 245, 322
Hpy8I GTNNAC 3 cut(s) 175, 199, 504
Hpy99I CGWCG 2 cut(s) 221, 256
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 150
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 7 cut(s) 76, 103, 135, 139, 197, 258, 528
Lsp1109I GCAGC 5 cut(s) 46, 247, 317, 320, 386
LweI GCATC 1 cut(s) 39
MaeI CTAG 2 cut(s) 12, 18
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 5 cut(s) 128, 195, 274, 442, 485
MfeI CAATTG 1 cut(s) 354
MluCI AATT 3 cut(s) 40, 354, 379
MnlI CCTC 8 cut(s) 99, 214, 225, 395, 402, 432, 442, 463
MseI TTAA 1 cut(s) 528
MspI CCGG 2 cut(s) 126, 184
MspR9I CCNGG 2 cut(s) 91, 184
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 23, 150
NciI CCSGG 1 cut(s) 184
NdeII GATC 1 cut(s) 441
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 1 cut(s) 106
NspV TTCGAA 2 cut(s) 212, 389
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 7 cut(s) 36, 140, 143, 237, 307, 310, 376
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 7 cut(s) 35, 139, 142, 236, 306, 309, 375
Sau3AI GATC 1 cut(s) 441
ScrFI CCNGG 2 cut(s) 91, 184
SetI ASST 3 cut(s) 135, 191, 240
SfaNI GCATC 1 cut(s) 39
SfuI TTCGAA 2 cut(s) 212, 389
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 3 cut(s) 40, 354, 379
SsiI CCGC 4 cut(s) 138, 141, 144, 153
SspI AATATT 1 cut(s) 298
SspMI CTAG 2 cut(s) 12, 18
StyD4I CCNGG 2 cut(s) 89, 182
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 3 cut(s) 212, 389, 444
TasI AATT 3 cut(s) 40, 354, 379
TauI GCSGC 2 cut(s) 141, 144
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 166
TseI GCWGC 5 cut(s) 34, 235, 305, 308, 374
TspDTI ATGAA 1 cut(s) 492
TspRI CASTG 1 cut(s) 166
Van91I CCANNNNNTGG 1 cut(s) 359
XapI RAATTY 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 503
XspI CTAG 2 cut(s) 12, 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.