Rroxscaffold_7G00159090

Uncharacterised conserved protein UCP031279 (InterPro IPR016972)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000667
Physical Location & Seq
Forward (+)
2377627 .. 2378130
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159090.1

Sequence Viewer

Length: 504 bp
ATGAGAAGCACCAAGGCTCAGAACCAGAACCGGTTCCTGAGAATCATCACAGTCCCCATCAGGGCCTTGGGCAAGGCCAAGGACTTTTACGTCAAAAGCATGACAGACGTCGGCGACAGATTCAGCTACGGTGGGAGCACCATGGCCGGCCCCGGCGGCCAATTCTCCTCGGGTTTACCCAAAAGCTTCAGCACGAGATCGTCATCGTCGAGGTCCAACCAGGGCAACGATGACTTTTCCGAGCTGGTGAGGGCTGCCTCGGCCAGGAGCTACGGGACTCGTATCGACGTGGACAAGATACTTCAAGACCAGCTGAAGAGGTCGGCGACGACGACGACGACGATGGGGTCGAGGCAAGTGTTGCCCAAGTGTGGCAGCGTGGCCATGGGACGGATTGACGAGGATGCCGCTTGTGATTTCGAGGAGGAAGGTGACGTGAAGAAGGACTTGTATCCCAGAAGCAGAAGCTATGCTGTCGGAAAGAGAAGCGTTGCGTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.25

Weight (kDa)

9.8

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 89, 346
AatII GACGTC 1 cut(s) 111
AciI CCGC 2 cut(s) 156, 408
AcoI YGGCCR 4 cut(s) 144, 157, 261, 381
AcuI CTGAAG 2 cut(s) 172, 335
AcyI GRCGYC 1 cut(s) 108
AfiI CCNNNNNNNGG 4 cut(s) 61, 264, 371, 390
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 305
AjiI CACGTC 2 cut(s) 289, 436
AjnI CCWGG 2 cut(s) 219, 263
AluBI AGCT 6 cut(s) 126, 186, 244, 270, 313, 468
AluI AGCT 6 cut(s) 126, 186, 244, 270, 313, 468
Alw21I GWGCWC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 7 cut(s) 63, 75, 144, 148, 157, 261, 381
ApeKI GCWGC 2 cut(s) 254, 375
AsiGI ACCGGT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 3 cut(s) 63, 149, 213
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 259, 443
AvaI CYCGRG 1 cut(s) 169
AvaII GGWCC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 383
BauI CACGAG 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 241, 387
BccI CCATC 2 cut(s) 65, 337
BciT130I CCWGG 2 cut(s) 221, 265
BciVI GTATCC 1 cut(s) 462
BcnI CCSGG 1 cut(s) 153
BfuI GTATCC 1 cut(s) 462
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 4 cut(s) 157, 255, 376, 408
BlsI GCNGC 4 cut(s) 158, 256, 377, 409
Bme1390I CCNGG 3 cut(s) 153, 221, 265
Bme18I GGWCC 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 169
BmgBI CACGTC 2 cut(s) 289, 436
BmgT120I GGNCC 3 cut(s) 63, 149, 213
BmiI GGNNCC 2 cut(s) 35, 151
BmrFI CCNGG 3 cut(s) 153, 221, 265
BmsI GCATC 1 cut(s) 394
BoxI GACNNNNGTC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 384
BsaWI WCCGGW 1 cut(s) 30
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 264, 371, 390
Bse118I RCCGGY 2 cut(s) 30, 146
Bse8I GATNNNNATC 1 cut(s) 202
BseBI CCWGG 2 cut(s) 221, 265
BseDI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 384
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 202
BseLI CCNNNNNNNGG 4 cut(s) 61, 264, 371, 390
BseMII CTCAG 2 cut(s) 29, 32
BseRI GAGGAG 2 cut(s) 157, 437
BseXI GCAGC 2 cut(s) 241, 387
BshFI GGCC 7 cut(s) 65, 77, 146, 150, 159, 263, 383
BshTI ACCGGT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 3 cut(s) 31, 147, 153
BslFI GGGAC 3 cut(s) 38, 289, 402
BslI CCNNNNNNNGG 4 cut(s) 61, 264, 371, 390
BsmFI GGGAC 3 cut(s) 38, 289, 402
BsnI GGCC 7 cut(s) 65, 77, 146, 150, 159, 263, 383
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 197
Bsp19I CCATGG 2 cut(s) 141, 384
BspACI CCGC 2 cut(s) 156, 408
BspANI GGCC 7 cut(s) 65, 77, 146, 150, 159, 263, 383
BspCNI CTCAG 2 cut(s) 30, 31
BspLI GGNNCC 2 cut(s) 35, 151
BsrFI RCCGGY 2 cut(s) 30, 146
BssAI RCCGGY 2 cut(s) 30, 146
BssECI CCNNGG 9 cut(s) 12, 66, 78, 141, 151, 168, 220, 258, 384
BssMI GATC 1 cut(s) 197
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 193
BssT1I CCWWGG 5 cut(s) 12, 66, 78, 141, 384
Bst2BI CACGAG 1 cut(s) 193
Bst2UI CCWGG 2 cut(s) 221, 265
Bst4CI ACNGT 2 cut(s) 52, 131
Bst6I CTCTTC 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 18, 38
BstDSI CCRYGG 2 cut(s) 141, 384
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 3 cut(s) 156, 260, 361
BstNI CCWGG 2 cut(s) 221, 265
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 151, 219, 263
BstV1I GCAGC 2 cut(s) 241, 387
BsuI GTATCC 1 cut(s) 462
BsuRI GGCC 7 cut(s) 65, 77, 146, 150, 159, 263, 383
BtgI CCRYGG 2 cut(s) 141, 384
BtrI CACGTC 2 cut(s) 289, 436
BtsCI GGATG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 148
Cfr10I RCCGGY 2 cut(s) 30, 146
Cfr13I GGNCC 3 cut(s) 63, 149, 213
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 3 cut(s) 100, 142, 385
DdeI CTNAG 2 cut(s) 18, 38
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
DrdI GACNNNNNNGTC 2 cut(s) 89, 346
DseDI GACNNNNNNGTC 2 cut(s) 89, 346
EaeI YGGCCR 4 cut(s) 144, 157, 261, 381
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco130I CCWWGG 5 cut(s) 12, 66, 78, 141, 384
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 172, 335
Eco88I CYCGRG 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 63
EcoRII CCWGG 2 cut(s) 219, 263
EcoT14I CCWWGG 5 cut(s) 12, 66, 78, 141, 384
ErhI CCWWGG 5 cut(s) 12, 66, 78, 141, 384
FaeI CATG 3 cut(s) 103, 145, 388
FaiI YATR 4 cut(s) 101, 143, 386, 471
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 3 cut(s) 38, 289, 402
FatI CATG 3 cut(s) 99, 141, 384
Fnu4HI GCNGC 4 cut(s) 157, 255, 376, 408
FokI GGATG 1 cut(s) 416
FseI GGCCGGCC 1 cut(s) 150
Fsp4HI GCNGC 4 cut(s) 157, 255, 376, 408
GluI GCNGC 4 cut(s) 157, 255, 376, 408
HaeIII GGCC 7 cut(s) 65, 77, 146, 150, 159, 263, 383
HapII CCGG 3 cut(s) 31, 147, 153
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 3 cut(s) 103, 145, 388
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 3 cut(s) 42, 120, 277
HpaII CCGG 3 cut(s) 31, 147, 153
HphI GGTGA 2 cut(s) 259, 443
Hpy166II GTNNAC 2 cut(s) 176, 292
Hpy188I TCNGA 3 cut(s) 21, 241, 479
Hpy188III TCNNGA 2 cut(s) 37, 305
Hpy8I GTNNAC 2 cut(s) 176, 292
Hpy99I CGWCG 8 cut(s) 113, 211, 290, 331, 334, 337, 340, 343
HpyAV CCTTC 2 cut(s) 422, 436
HpyCH4III ACNGT 2 cut(s) 52, 131
HpyCH4IV ACGT 4 cut(s) 90, 108, 288, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 260, 361
HpyF3I CTNAG 2 cut(s) 18, 38
HpySE526I ACGT 4 cut(s) 90, 108, 288, 435
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 3 cut(s) 103, 145, 388
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 135, 267
Lsp1109I GCAGC 2 cut(s) 241, 387
LweI GCATC 1 cut(s) 394
MaeII ACGT 4 cut(s) 90, 108, 288, 435
MaeIII GTNAC 1 cut(s) 431
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 328, 451
MhlI GDGCHC 1 cut(s) 140
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 1 cut(s) 161
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 2 cut(s) 240, 457
MnlI CCTC 9 cut(s) 178, 204, 243, 268, 312, 345, 394, 415, 418
Mox20I TGGCCA 1 cut(s) 383
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 32
MscI TGGCCA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 3 cut(s) 31, 147, 153
MspR9I CCNGG 3 cut(s) 153, 221, 265
MvaI CCWGG 2 cut(s) 221, 265
MwoI GCNNNNNNNGC 3 cut(s) 156, 260, 361
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 153
NcoI CCATGG 2 cut(s) 141, 384
NdeII GATC 1 cut(s) 197
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 3 cut(s) 103, 145, 388
NlaIV GGNNCC 2 cut(s) 35, 151
NmeAIII GCCGAG 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 431
PcsI WCGNNNNNNNCGW 5 cut(s) 206, 329, 335, 338, 347
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 2 cut(s) 42, 120
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 4 cut(s) 158, 256, 377, 409
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 2 cut(s) 219, 263
PspGI CCWGG 2 cut(s) 219, 263
PspN4I GGNNCC 2 cut(s) 35, 151
PspPI GGNCC 3 cut(s) 63, 149, 213
PvuII CAGCTG 1 cut(s) 313
RigI GGCCGGCC 1 cut(s) 150
SatI GCNGC 4 cut(s) 157, 255, 376, 408
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 3 cut(s) 63, 149, 213
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 3 cut(s) 153, 221, 265
SduI GDGCHC 1 cut(s) 140
SfaNI GCATC 1 cut(s) 394
SfiI GGCCNNNNNGGCC 1 cut(s) 156
SinI GGWCC 1 cut(s) 213
Sse9I AATT 1 cut(s) 161
SsiI CCGC 2 cut(s) 156, 408
StyD4I CCNGG 3 cut(s) 151, 219, 263
StyI CCWWGG 5 cut(s) 12, 66, 78, 141, 384
TaaI ACNGT 2 cut(s) 52, 131
TaiI ACGT 4 cut(s) 93, 111, 291, 438
TaqI TCGA 4 cut(s) 209, 285, 350, 420
TasI AATT 1 cut(s) 161
TauI GCSGC 2 cut(s) 159, 410
TfiI GAWTC 2 cut(s) 42, 120
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 2 cut(s) 254, 375
Tsp45I GTSAC 1 cut(s) 431
TspGWI ACGGA 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 32
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.