Rmu_sc0004703.1_g000002

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004703.1
OG0000667
Physical Location & Seq
Forward (+)
6573 .. 6926
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004703.1_g000002.1.cds

Sequence Viewer

Length: 354 bp
atgaggcagagcaaagcaactaggcaaagcaagttgatgcgctttatttcttcacccattaggactctaaccaaggccaagaacttctacatgaggagtttagaagattgtgctgccaaggtgggttacggcggcggcggcggcggcgtgggtggttacactgcttcacaagttccacagttgccaaggagcctcagcgtcaactcctccagttcgaacgatgatgaggatttgaggcagcttctaagaacggcatcgtcaaagaagaacaacgatgcagagaaaggggacaataaggcagcaggctcagatatgaaccgaagaggaagaccaaatgttagtattaaactatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.64

Weight (kDa)

10.32

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 132, 135, 138, 141, 144
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 3 cut(s) 113, 238, 299
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 194
BbvI GCAGC 3 cut(s) 100, 250, 311
BceAI ACGGC 2 cut(s) 145, 267
BfaI CTAG 1 cut(s) 21
BisI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
BlsI GCNGC 8 cut(s) 115, 134, 137, 140, 143, 146, 240, 301
BmiI GGNNCC 1 cut(s) 191
BmsI GCATC 3 cut(s) 27, 263, 265
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 72, 117, 185
Bse1I ACTGG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 72, 117, 185
BseMII CTCAG 2 cut(s) 208, 321
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 109, 196
BseXI GCAGC 3 cut(s) 100, 250, 311
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 215
BspACI CCGC 5 cut(s) 132, 135, 138, 141, 144
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 2 cut(s) 207, 320
BspLI GGNNCC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 215
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 72, 117, 185
BssT1I CCWWGG 3 cut(s) 72, 117, 185
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 316
BstBI TTCGAA 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 3 cut(s) 194, 245, 307
BstHHI GCGC 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 138, 141, 144
BstV1I GCAGC 3 cut(s) 100, 250, 311
BstV2I GAAGAC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 1 cut(s) 42
CseI GACGC 1 cut(s) 187
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 77, 192, 241, 306
CviKI_1 RGCY 4 cut(s) 77, 192, 241, 306
DdeI CTNAG 3 cut(s) 194, 245, 307
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco130I CCWWGG 3 cut(s) 72, 117, 185
EcoT14I CCWWGG 3 cut(s) 72, 117, 185
ErhI CCWWGG 3 cut(s) 72, 117, 185
FaeI CATG 1 cut(s) 94
FaiI YATR 3 cut(s) 92, 314, 352
FaqI GGGAC 1 cut(s) 302
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
Fsp4HI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 41
GluI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 1 cut(s) 77
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 310
Hpy8I GTNNAC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 141, 144
HpyF3I CTNAG 3 cut(s) 194, 245, 307
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 2 cut(s) 223, 288
Lsp1109I GCAGC 3 cut(s) 100, 250, 311
LweI GCATC 3 cut(s) 27, 263, 265
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 125, 155
MboII GAAGA 5 cut(s) 42, 116, 277, 333, 339
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 6 cut(s) 87, 203, 217, 220, 228, 317
MseI TTAA 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 138, 141, 144
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 191
NspV TTCGAA 1 cut(s) 215
PkrI GCNGC 8 cut(s) 115, 134, 137, 140, 143, 146, 240, 301
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 8 cut(s) 114, 133, 136, 139, 142, 145, 239, 300
SchI GAGTC 1 cut(s) 58
SetI ASST 2 cut(s) 123, 243
SfaNI GCATC 3 cut(s) 27, 263, 265
SfuI TTCGAA 1 cut(s) 215
SsiI CCGC 5 cut(s) 132, 135, 138, 141, 144
SspMI CTAG 1 cut(s) 21
StyI CCWWGG 3 cut(s) 72, 117, 185
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 215
TauI GCSGC 5 cut(s) 135, 138, 141, 144, 147
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 166
TseI GCWGC 3 cut(s) 113, 238, 299
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 166
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.