Prupe.6G218500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000667
Physical Location & Seq
Forward (+)
22514887 .. 22515833
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G218500.1

Sequence Viewer

Length: 486 bp
ATGATCATGGCCAAGGCCAGGAAAGAAAGCAGACTCGCCAGGTTTTTGAAGTCCCCAATAAGGATTTTAATCAAGGCCAGGGACTTCTACATCAAGAGCATGACAGAGTGCTCGGGTACGTTTGATTATGCCACGGCGATGGGTTGCCCTACCCAAATCCCAAGTTCTTTGCCTAAAAGCTACAGCACTAACTCCACCAAATCCAGCGCCTCTAACAATGAAGATTACAGGGAGCTTCTGAGGGCTGCTTCTACTAGGAGTGTAAGAAGTAAAGTTGAATTTGATCTTGCTCGAAAAGCGCAACAGCCTAGGCAGCCTCCAATGGCGGCAGAGCCCAACACCGTGCCTCGCAGTCGTAGCGTTGGGATTGGAAGGATTGATGAAGACAAGGCTTGTGAGTTTGATGAAGAAGAAGTCAAGGTGAAGAGAGATGTGTATCCAAGAAGTAGAAGCTACGCTGTTGCTAGGAGAACAATTATGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.24

Weight (kDa)

9.92

Isoelectric Point (pI)

71.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 18, 60
AgsI TTSAA 2 cut(s) 49, 278
AjnI CCWGG 3 cut(s) 17, 38, 77
AluBI AGCT 3 cut(s) 180, 235, 453
AluI AGCT 3 cut(s) 180, 235, 453
Alw21I GWGCWC 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 3 cut(s) 9, 15, 75
ApeKI GCWGC 2 cut(s) 245, 313
ApoI RAATTY 1 cut(s) 278
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 2 cut(s) 209, 301
AsuHPI GGTGA 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 112
AvrII CCTAGG 1 cut(s) 308
BalI TGGCCA 1 cut(s) 11
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 2 cut(s) 232, 325
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 3 cut(s) 19, 40, 79
BciVI GTATCC 1 cut(s) 447
BclI TGATCA 1 cut(s) 3
BfaI CTAG 4 cut(s) 255, 309, 465, 484
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 210
BfuI GTATCC 1 cut(s) 447
BisI GCNGC 3 cut(s) 246, 314, 327
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 3 cut(s) 247, 315, 328
Bme1390I CCNGG 3 cut(s) 19, 40, 79
BmeT110I CYCGRG 1 cut(s) 112
BmrFI CCNGG 3 cut(s) 19, 40, 79
BpiI GAAGAC 1 cut(s) 390
BsaBI GATNNNNATC 2 cut(s) 68, 435
BsaJI CCNNGG 4 cut(s) 12, 78, 132, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 60
Bse8I GATNNNNATC 2 cut(s) 68, 435
BseBI CCWGG 3 cut(s) 19, 40, 79
BseDI CCNNGG 4 cut(s) 12, 78, 132, 308
BseJI GATNNNNATC 2 cut(s) 68, 435
BseLI CCNNNNNNNGG 2 cut(s) 18, 60
BseMII CTCAG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 232, 325
BshFI GGCC 3 cut(s) 11, 17, 77
BsiHKAI GWGCWC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 112
BslFI GGGAC 2 cut(s) 37, 95
BslI CCNNNNNNNGG 2 cut(s) 18, 60
BsmFI GGGAC 2 cut(s) 37, 95
BsnI GGCC 3 cut(s) 11, 17, 77
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 113, 336
Bsp143I GATC 2 cut(s) 3, 283
BspACI CCGC 1 cut(s) 326
BspANI GGCC 3 cut(s) 11, 17, 77
BspCNI CTCAG 1 cut(s) 231
BssECI CCNNGG 4 cut(s) 12, 78, 132, 308
BssMI GATC 2 cut(s) 3, 283
BssT1I CCWWGG 2 cut(s) 12, 308
Bst2UI CCWGG 3 cut(s) 19, 40, 79
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 419
BstDEI CTNAG 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 301
BstKTI GATC 2 cut(s) 6, 286
BstMBI GATC 2 cut(s) 3, 283
BstMWI GCNNNNNNNGC 3 cut(s) 296, 313, 357
BstNI CCWGG 3 cut(s) 19, 40, 79
BstSCI CCNGG 3 cut(s) 17, 38, 77
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 232, 325
BstV2I GAAGAC 1 cut(s) 390
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuI GTATCC 1 cut(s) 447
BsuRI GGCC 3 cut(s) 11, 17, 77
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 152
CfoI GCGC 2 cut(s) 209, 301
Csp6I GTAC 1 cut(s) 117
CviAII CATG 2 cut(s) 7, 100
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 239
DpnI GATC 2 cut(s) 5, 285
DpnII GATC 2 cut(s) 3, 283
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
Eco130I CCWWGG 2 cut(s) 12, 308
Eco24I GRGCYC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 17, 38, 77
EcoT14I CCWWGG 2 cut(s) 12, 308
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 12, 308
FaeI CATG 2 cut(s) 10, 103
FaiI YATR 4 cut(s) 8, 101, 129, 479
FaqI GGGAC 2 cut(s) 37, 95
FatI CATG 2 cut(s) 6, 99
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 246, 314, 327
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 3 cut(s) 246, 314, 327
FspBI CTAG 4 cut(s) 255, 309, 465, 484
GlaI GCGC 2 cut(s) 208, 300
GluI GCNGC 3 cut(s) 246, 314, 327
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 3 cut(s) 11, 17, 77
HhaI GCGC 2 cut(s) 209, 301
Hin1II CATG 2 cut(s) 10, 103
Hin6I GCGC 2 cut(s) 207, 299
HinP1I GCGC 2 cut(s) 207, 299
HinfI GANTC 1 cut(s) 33
HphI GGTGA 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 366
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 313, 357
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 2 cut(s) 10, 103
HspAI GCGC 2 cut(s) 207, 299
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 283
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 8 cut(s) 4, 25, 31, 52, 64, 91, 214, 217
Lsp1109I GCAGC 2 cut(s) 232, 325
MaeI CTAG 4 cut(s) 255, 309, 465, 484
MaeII ACGT 1 cut(s) 119
MalI GATC 2 cut(s) 5, 285
MboI GATC 2 cut(s) 3, 283
MboII GAAGA 5 cut(s) 233, 395, 419, 422, 436
MhlI GDGCHC 2 cut(s) 113, 336
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 2 cut(s) 278, 474
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 4 cut(s) 220, 234, 327, 357
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 11
MspR9I CCNGG 3 cut(s) 19, 40, 79
MvaI CCWGG 3 cut(s) 19, 40, 79
MwoI GCNNNNNNNGC 3 cut(s) 296, 313, 357
NdeII GATC 2 cut(s) 3, 283
NlaIII CATG 2 cut(s) 10, 103
PkrI GCNGC 3 cut(s) 247, 315, 328
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
Psp6I CCWGG 3 cut(s) 17, 38, 77
PspGI CCWGG 3 cut(s) 17, 38, 77
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 246, 314, 327
Sau3AI GATC 2 cut(s) 3, 283
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 3 cut(s) 19, 40, 79
SduI GDGCHC 2 cut(s) 113, 336
SetI ASST 6 cut(s) 44, 122, 182, 237, 423, 455
SfcI CTRYAG 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 2 cut(s) 278, 474
SsiI CCGC 1 cut(s) 326
SspMI CTAG 4 cut(s) 255, 309, 465, 484
StyD4I CCNGG 3 cut(s) 17, 38, 77
StyI CCWWGG 2 cut(s) 12, 308
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 292
TasI AATT 2 cut(s) 278, 474
TauI GCSGC 1 cut(s) 329
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseI GCWGC 2 cut(s) 245, 313
TspDTI ATGAA 3 cut(s) 234, 396, 420
XapI RAATTY 1 cut(s) 278
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 4 cut(s) 255, 309, 465, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.