Prupe.8G148800_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000667
Physical Location & Seq
Reverse (-)
16315910 .. 16316401
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G148800.1

Sequence Viewer

Length: 492 bp
ATGTACATTATTTGTGCACCCATTAGAACTCTGACCAAGGCCAGGAACTTTTACATGAGGGGGCTTGAGGATTATGCTGGCAAGGTGGGTTATGGTGGTGGTGTAAGTGGCTACACTGCCTCACAAGTTCCACACTTGCCCAAGAGCTTCAGTGTCAATTCCTCGAGCTCTAGCGACAATGAGGACTTGAGGCAGCTTCTCAGGACGGCGTCGTCAAGGAAGAGCAATGCAGAGAAAGAAAGCACTGTTAAGTCAGAAGGTAATTCAGATATGCATAGAAGACCAATTGTTAAACAAGCAGCTCAACCCATTGGTAGACAACAAACTATGAATGGGATGGGGATAAGGAGTTACAGTGTTGGGATGAAGATGGGAAGAATTGATGAGGAGATGGCTTGTTCTTTTGAGGAGGATGAAGTGAATGTGAAGGCTGACTTCTATCCAAGAAGTAGAAGCTACGCTGTCAAGAGAAGAAGTGGTGGGTTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.07

Weight (kDa)

9.62

Isoelectric Point (pI)

75.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 316
AcuI CTGAAG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 42
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 5 cut(s) 147, 168, 196, 302, 456
AluI AGCT 5 cut(s) 147, 168, 196, 302, 456
Alw21I GWGCWC 2 cut(s) 19, 170
Alw44I GTGCAC 1 cut(s) 15
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 1 cut(s) 39
ApaLI GTGCAC 1 cut(s) 15
ApeKI GCWGC 2 cut(s) 193, 299
AvaI CYCGRG 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 286
Bbv12I GWGCWC 2 cut(s) 19, 170
BbvI GCAGC 2 cut(s) 205, 311
BccI CCATC 3 cut(s) 331, 364, 385
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 43
BfaI CTAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 194, 300
BlsI GCNGC 2 cut(s) 195, 301
Bme1390I CCNGG 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 286
BpuEI CTTGAG 2 cut(s) 86, 208
BsaHI GRCGYC 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 3 cut(s) 342, 369, 418
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 214
BseRI GAGGAG 2 cut(s) 401, 422
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 2 cut(s) 205, 311
BshFI GGCC 1 cut(s) 41
BsiHKAI GWGCWC 2 cut(s) 19, 170
BsiHKCI CYCGRG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 42
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 19, 170
Bsp1407I TGTACA 1 cut(s) 3
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 232
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 2 cut(s) 247, 356
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 3 cut(s) 342, 369, 418
BstNI CCWGG 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 205, 311
BstV2I GAAGAC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 3 cut(s) 342, 369, 418
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 4 cut(s) 114, 157, 243, 361
Cac8I GCNNGC 1 cut(s) 79
CseI GACGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 55
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 200
DrdI GACNNNNNNGTC 1 cut(s) 211
DseDI GACNNNNNNGTC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 58
FaiI YATR 7 cut(s) 56, 75, 93, 272, 276, 329, 490
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FatI CATG 1 cut(s) 54
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 194, 300
FokI GGATG 3 cut(s) 349, 376, 425
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 194, 300
FspBI CTAG 1 cut(s) 171
GluI GCNGC 2 cut(s) 194, 300
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 17, 317
Hpy188I TCNGA 3 cut(s) 33, 256, 268
Hpy188III TCNNGA 2 cut(s) 202, 466
Hpy8I GTNNAC 2 cut(s) 17, 317
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 251, 421
HpyCH4III ACNGT 2 cut(s) 247, 356
HpyCH4V TGCA 4 cut(s) 17, 230, 274, 488
HpyF3I CTNAG 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 58
LguI GCTCTTC 1 cut(s) 215
LpnPI CCDG 4 cut(s) 28, 55, 63, 187
Lsp1109I GCAGC 2 cut(s) 205, 311
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 350
MboII GAAGA 5 cut(s) 232, 291, 379, 387, 483
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 19, 170
MluCI AATT 4 cut(s) 157, 262, 285, 378
MnlI CCTC 9 cut(s) 51, 61, 130, 172, 175, 183, 379, 400, 403
Mph1103I ATGCAT 1 cut(s) 276
MseI TTAA 2 cut(s) 249, 291
MspR9I CCNGG 1 cut(s) 43
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 43
NlaIII CATG 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 195, 301
Psp124BI GAGCTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspXI VCTCGAGB 1 cut(s) 163
PsyI GACNNNGTC 1 cut(s) 208
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 249, 291
SatI GCNGC 2 cut(s) 194, 300
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 2 cut(s) 19, 170
SetI ASST 7 cut(s) 87, 149, 170, 198, 262, 304, 458
Sfr274I CTCGAG 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 163
SmlI CTYRAG 3 cut(s) 65, 163, 187
SmoI CTYRAG 3 cut(s) 65, 163, 187
Sse9I AATT 4 cut(s) 157, 262, 285, 378
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 247, 356
TaqI TCGA 1 cut(s) 164
TasI AATT 4 cut(s) 157, 262, 285, 378
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 2 cut(s) 249, 291
Tru9I TTAA 2 cut(s) 249, 291
TscAI CASTG 4 cut(s) 121, 157, 250, 361
TseI GCWGC 2 cut(s) 193, 299
TspDTI ATGAA 3 cut(s) 344, 380, 429
TspRI CASTG 4 cut(s) 121, 157, 250, 361
Tth111I GACNNNGTC 1 cut(s) 208
VneI GTGCAC 1 cut(s) 15
XhoI CTCGAG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 316
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.